Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- peroxisome 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400055552 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G62380.1 | PGSC0003DMT400055552 | AT5G62380.1 | 18445131 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0536500-01 | Rice | cytosol | 79.73 | 72.84 |
| Zm00001d045600_P001 | Maize | nucleus | 65.54 | 69.78 |
| Zm00001d051294_P001 | Maize | cytosol | 78.38 | 66.29 |
| Solyc06g034340.1.1 | Tomato | nucleus | 98.65 | 42.94 |
| CDY00280 | Canola | nucleus | 73.65 | 41.92 |
| KRH62610 | Soybean | nucleus | 90.54 | 39.3 |
| GSMUA_Achr8P11590_001 | Banana | cytosol | 81.76 | 38.05 |
| KRH23801 | Soybean | nucleus | 87.84 | 37.46 |
| TraesCS4A01G486200.1 | Wheat | nucleus | 84.46 | 37.2 |
| TraesCS7D01G008500.1 | Wheat | nucleus | 84.46 | 37.2 |
| TraesCS7A01G008800.1 | Wheat | nucleus | 83.78 | 36.9 |
| VIT_16s0022g00690.t01 | Wine grape | cytosol, nucleus, peroxisome | 89.19 | 36.77 |
| GSMUA_Achr7P06640_001 | Banana | nucleus | 83.78 | 36.47 |
| KRH39986 | Soybean | nucleus | 87.16 | 36.44 |
| KRH56355 | Soybean | nucleus | 89.19 | 36.36 |
| GSMUA_Achr11P... | Banana | nucleus | 77.7 | 36.28 |
| HORVU7Hr1G000140.6 | Barley | nucleus | 83.78 | 35.53 |
| OQU75680 | Sorghum | nucleus | 81.08 | 35.4 |
| TraesCS2B01G403300.1 | Wheat | cytosol, nucleus, peroxisome | 80.41 | 35.1 |
| TraesCS2A01G386300.1 | Wheat | cytosol, nucleus, peroxisome | 80.41 | 35.1 |
| HORVU2Hr1G092030.2 | Barley | cytosol, nucleus, peroxisome | 80.41 | 35.1 |
| GSMUA_Achr11P... | Banana | nucleus | 83.11 | 34.94 |
| TraesCS2D01G382800.1 | Wheat | cytosol, nucleus, peroxisome | 79.73 | 34.81 |
| Zm00001d017396_P001 | Maize | nucleus | 50.0 | 34.74 |
| OQU82026 | Sorghum | nucleus | 79.05 | 34.41 |
| Zm00001d002828_P001 | Maize | cytosol | 79.05 | 34.01 |
| PGSC0003DMT400009136 | Potato | nucleus | 79.05 | 33.72 |
| KXG31125 | Sorghum | nucleus | 79.05 | 33.72 |
| PGSC0003DMT400002318 | Potato | nucleus | 71.62 | 33.54 |
| TraesCS6D01G220600.1 | Wheat | nucleus | 79.73 | 33.52 |
| Bra035896.1-P | Field mustard | nucleus | 75.0 | 33.43 |
| CDY16776 | Canola | nucleus | 75.0 | 33.43 |
| HORVU6Hr1G060800.3 | Barley | nucleus | 80.41 | 33.43 |
| TraesCS6A01G237900.1 | Wheat | nucleus | 79.05 | 33.24 |
| PGSC0003DMT400012079 | Potato | nucleus | 66.89 | 33.22 |
| CDX87246 | Canola | nucleus | 75.0 | 33.04 |
| PGSC0003DMT400029321 | Potato | nucleus | 68.92 | 32.59 |
| PGSC0003DMT400067086 | Potato | nucleus | 72.3 | 32.52 |
| AT5G62380.1 | Thale cress | nucleus | 75.68 | 32.18 |
| Os02t0643600-00 | Rice | nucleus | 80.41 | 32.16 |
| Bra010077.1-P | Field mustard | nucleus | 75.0 | 31.99 |
| GSMUA_Achr6P36840_001 | Banana | nucleus | 79.73 | 31.98 |
| CDY58006 | Canola | nucleus | 75.0 | 31.9 |
| Os06t0104200-01 | Rice | nucleus | 78.38 | 31.87 |
| CDY30716 | Canola | nucleus | 76.35 | 31.3 |
| PGSC0003DMT400025026 | Potato | nucleus | 68.24 | 31.17 |
| Bra029266.1-P | Field mustard | nucleus | 76.35 | 31.04 |
| TraesCS6B01G286200.1 | Wheat | cytosol | 79.73 | 30.97 |
| PGSC0003DMT400014872 | Potato | nucleus | 68.92 | 29.31 |
| PGSC0003DMT400031571 | Potato | nucleus | 72.97 | 29.19 |
| Bra029264.1-P | Field mustard | nucleus | 46.62 | 22.7 |
| CDY00281 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003441 |
| InterPro:IPR036093 | UniProt:M1BY51 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | EnsemblPlantsGene:PGSC0003DMG400021576 |
| PGSC:PGSC0003DMG400021576 | EnsemblPlants:PGSC0003DMT400055552 | PFscan:PS51005 | PANTHER:PTHR31989 | PANTHER:PTHR31989:SF3 | SUPFAM:SSF101941 |
| UniParc:UPI00029496E7 | SEG:seg | : | : | : | : |
Description
NAC domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021576]
Coordinates
chr6:-:36062882..36063498
Molecular Weight (calculated)
17369.5 Da
IEP (calculated)
9.213
GRAVY (calculated)
-0.869
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSLSHVPPG FRFHPTDEEL VDYYLRKKIT SRRIDLDVIK DIDLYKIEPW DLQELCRMGT EEQSDWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI
101: YSKHDLIGMR KTLVYYKGRA PNGQKSDFIM HEYRLETDPN GAPQASFP
101: YSKHDLIGMR KTLVYYKGRA PNGQKSDFIM HEYRLETDPN GAPQASFP
001: MNSFSHVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIK DIDLYKIEPW DLQELCKIGH EEQSDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI
101: YLRHSLIGMR KTLVFYKGRA PNGQKSDWIM HEYRLETDEN GTPQEEGWVV CRVFKKRLAA VRRMGDYDSS PSHWYDDQLS FMASELETNG QRRILPNHHQ
201: QQQHEHQQHM PYGLNASAYA LNNPNLQCKQ ELELHYNHLV QRNHLLDESH LSFLQLPQLE SPKIQQDNSN CNSLPYGTSN IDNNSSHNAN LQQSNIAHEE
301: QLNQGNQNFS SLYMNSGNEQ VMDQVTDWRV LDKFVASQLS NEEAATASAS IQNNAKDTSN AEYQVDEEKD PKRASDMGEE YTASTSSSCQ IDLWK
101: YLRHSLIGMR KTLVFYKGRA PNGQKSDWIM HEYRLETDEN GTPQEEGWVV CRVFKKRLAA VRRMGDYDSS PSHWYDDQLS FMASELETNG QRRILPNHHQ
201: QQQHEHQQHM PYGLNASAYA LNNPNLQCKQ ELELHYNHLV QRNHLLDESH LSFLQLPQLE SPKIQQDNSN CNSLPYGTSN IDNNSSHNAN LQQSNIAHEE
301: QLNQGNQNFS SLYMNSGNEQ VMDQVTDWRV LDKFVASQLS NEEAATASAS IQNNAKDTSN AEYQVDEEKD PKRASDMGEE YTASTSSSCQ IDLWK
Arabidopsis Description
NAC007NAC domain-containing protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWX2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.