Factsheet for PGSC0003DMT400067086

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g065410.2.1	Tomato	nucleus	94.53	96.58
PGSC0003DMT400055552	Potato	cytosol, nucleus, peroxisome	32.52	72.3
PGSC0003DMT400002318	Potato	nucleus	64.74	67.41
VIT_18s0072g01060.t01	Wine grape	nucleus	58.36	61.34
TraesCS2A01G565900.1	Wheat	cytosol, nucleus, plastid	35.26	57.43
AT1G71930.2	Thale cress	nucleus	54.41	55.25
Bra007996.1-P	Field mustard	nucleus	54.41	54.74
CDY03671	Canola	nucleus	54.41	54.74
KRG91808	Soybean	nucleus	56.23	54.25
Bra016098.1-P	Field mustard	nucleus	53.19	54.18
CDX82202	Canola	nucleus	53.8	54.13
CDX96362	Canola	nucleus	53.19	53.85
CDX72846	Canola	nucleus	53.19	53.85
KRH34977	Soybean	nucleus	55.93	53.18
TraesCS2A01G566400.1	Wheat	nucleus	43.47	51.07
GSMUA_Achr7P23170_001	Banana	nucleus	37.69	49.8
GSMUA_Achr6P18860_001	Banana	cytosol, nucleus, plastid	38.6	49.42
GSMUA_Achr3P22360_001	Banana	nucleus	44.98	49.01
Zm00001d034984_P001	Maize	nucleus	40.43	48.01
TraesCS2A01G566000.1	Wheat	nucleus	43.47	47.99
TraesCS2A01G566200.1	Wheat	nucleus	43.77	47.21
TraesCS2D01G576400.1	Wheat	nucleus	43.77	47.21
TraesCS2B01G627000.1	Wheat	nucleus	42.86	47.0
PGSC0003DMT400009136	Potato	nucleus	48.94	46.4
TraesCS2D01G576300.1	Wheat	cytosol, mitochondrion, nucleus	44.07	46.03
HORVU2Hr1G126080.3	Barley	nucleus	44.38	45.62
TraesCS2D01G576200.1	Wheat	nucleus	43.77	45.43
TraesCS2B01G627200.1	Wheat	nucleus	43.47	45.11
TraesCS2B01G627100.1	Wheat	nucleus	42.86	44.9
TraesCS7B01G226600.1	Wheat	nucleus	42.55	44.87
TraesCS7D01G322700.1	Wheat	nucleus	42.55	44.87
TraesCS2A01G566100.1	Wheat	nucleus	43.47	44.83
Os08t0103900-01	Rice	nucleus	44.07	44.75
Zm00001d050039_P001	Maize	nucleus	40.12	44.75
TraesCS2D01G576500.2	Wheat	nucleus	42.86	44.62
TraesCS7A01G326000.1	Wheat	nucleus	42.25	44.55
EES13158	Sorghum	nucleus	44.07	43.54
Zm00001d002934_P001	Maize	nucleus	43.16	43.29
HORVU2Hr1G126040.14	Barley	nucleus	41.64	42.95
TraesCS2A01G566300.1	Wheat	nucleus	41.34	41.98
EES14359	Sorghum	nucleus	41.64	40.9
Os04t0691300-00	Rice	cytosol, nucleus	34.35	39.51
PGSC0003DMT400029321	Potato	nucleus	37.39	39.3
PGSC0003DMT400012079	Potato	nucleus	34.95	38.59
PGSC0003DMT400025026	Potato	nucleus	35.56	36.11
PGSC0003DMT400014872	Potato	nucleus	35.87	33.91
PGSC0003DMT400031571	Potato	nucleus	37.39	33.24

Protein Annotations

EntrezGene:102592931	MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	UniProt:M1CGN5	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365
EnsemblPlantsGene:PGSC0003DMG400026079	PGSC:PGSC0003DMG400026079	EnsemblPlants:PGSC0003DMT400067086	PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF41
SUPFAM:SSF101941	UniParc:UPI0002955D6C	RefSeq:XP_006353705.1	SEG:seg	:	:

Description

NAC domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026079]

Coordinates

chr6:-:46435320..46437491

Molecular Weight (calculated)

38471.7 Da

IEP (calculated)

6.454

GRAVY (calculated)

-0.909

Length

329 amino acids

Sequence
(BLAST)

001: MEMDSCVPPG FRFHPTEEEL VGYYLKRKIN SLKIDLDVIT DIDLYRIEPW DIQDRCKLGY EEQNEWYFFS HKDRKYPTGT RTNRATAAGF WKATGRDKAV
101: LSKEKIIGMR KTLVFYKGRA PNGRKSDWIM HEYRLQSSEH APPQEEGWVV CRAFKKPSPN KQPNLDAWQH AYYIRGANTT NYRPNSSLSE ITTIPMQHHQ
201: PLNNINAFNQ TANFPQFTFN PSHDHHHDYQ NMIINNSSTQ NFFENQVLVH DLPQLDSPTI STSFCTKDNI SLGEQSYTVN YNNEDDRGDE EKHNNGINNN
301: QFYGDWKNFD TLIEPPSHIS HLLECFPDL

Best Arabidopsis Sequence Match ( AT1G71930.2 )
(BLAST)

001: MDNIMQSSMP PGFRFHPTEE ELVGYYLDRK INSMKSALDV IVEIDLYKME PWDIQARCKL GYEEQNEWYF FSHKDRKYPT GTRTNRATAA GFWKATGRDK
101: AVLSKNSVIG MRKTLVYYKG RAPNGRKSDW IMHEYRLQNS ELAPVQEEGW VVCRAFRKPI PNQRPLGYEP WQNQLYHVES SNNYSSSVTM NTSHHIGASS
201: SSHNLNQMLM SNNHYNPNNT SSSMHQYGNI ELPQLDSPSL SPSLGTNKDQ NESFEQEEEK SFNCVDWRTL DTLLETQVIH PHNPNILMFE TQSYNPAPSF
301: PSMHQSYNEV EANIHHSLGC FPDS

Arabidopsis Description

NAC030NAC domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8W9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.