Factsheet for PGSC0003DMT400012079

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g079120.1.1	Tomato	cytosol, nucleus, plastid	83.22	80.78
PGSC0003DMT400055552	Potato	cytosol, nucleus, peroxisome	33.22	66.89
VIT_02s0154g00020.t01	Wine grape	nucleus	62.75	52.38
KRH57345	Soybean	nucleus	61.07	50.0
KRH04074	Soybean	nucleus	61.07	49.73
KRH28034	Soybean	nucleus	59.4	49.17
CDY21041	Canola	nucleus	57.05	48.16
CDY31249	Canola	nucleus	57.05	46.58
CDY15987	Canola	nucleus	52.68	46.31
CDY46914	Canola	nucleus	56.04	46.26
CDY31835	Canola	nucleus	55.7	45.98
CDX98078	Canola	nucleus	52.01	45.86
Bra026981.1-P	Field mustard	nucleus	52.01	45.59
CDY26551	Canola	nucleus	52.01	45.59
Bra016783.1-P	Field mustard	nucleus	57.05	43.81
AT1G12260.1	Thale cress	nucleus	58.05	43.8
CDY30057	Canola	nucleus	57.38	43.4
Bra019750.1-P	Field mustard	nucleus	56.38	42.75
PGSC0003DMT400009136	Potato	nucleus	48.99	42.07
AT1G62700.1	Thale cress	nucleus	55.03	41.62
Bra027024.1-P	Field mustard	nucleus	53.69	40.82
PGSC0003DMT400025026	Potato	nucleus	40.94	37.65
PGSC0003DMT400029321	Potato	nucleus	38.59	36.74
PGSC0003DMT400002318	Potato	nucleus	38.93	36.71
PGSC0003DMT400067086	Potato	nucleus	38.59	34.95
PGSC0003DMT400014872	Potato	nucleus	39.93	34.2
PGSC0003DMT400031571	Potato	nucleus	39.6	31.89
Os04t0443801-02	Rice	mitochondrion	0.0	0.0

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441
InterPro:IPR036093	UniProt:M1A0N7	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	EnsemblPlantsGene:PGSC0003DMG400004740
PGSC:PGSC0003DMG400004740	EnsemblPlants:PGSC0003DMT400012079	PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF3	SUPFAM:SSF101941
UniParc:UPI0002965F01	SEG:seg	:	:	:	:

Description

NAC domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004740]

Coordinates

chr8:-:52742056..52744329

Molecular Weight (calculated)

34775.6 Da

IEP (calculated)

7.558

GRAVY (calculated)

-0.872

Length

298 amino acids

Sequence
(BLAST)

001: MNSFAHVPPG FRFHPTDEEL VDYYLRKKIA SKRIDLDVIK EIDLYKIEPW DLQELCRIGS EEQNEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI
101: YRKQCLVGMR KTLEEGWAVC RVFKKKLATT IRREGDQLYQ HESLCWYNDD QLVSNFTPNF DSPQRNNFPN PYNVTPSYHH QLPYNNMHQQ YPHNNDALFL
201: QLPQLESPKI PLPYGSINNS IYNNNNNNYD QVTDWRVLDK LVASQLSTQQ DGYNVACSSS PASEKMNMQL QSDTKGQEMS SEIASLSASS SQFDNIWK

Best Arabidopsis Sequence Match ( AT1G12260.1 )
(BLAST)

001: MNSFSHVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIK DIDLYKIEPW DLQELCKIGH EEQSDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI
101: YLRHSLIGMR KTLVFYKGRA PNGQKSDWIM HEYRLETDEN GTPQEEGWVV CRVFKKRLAA VRRMGDYDSS PSHWYDDQLS FMASELETNG QRRILPNHHQ
201: QQQHEHQQHM PYGLNASAYA LNNPNLQCKQ ELELHYNHLV QRNHLLDESH LSFLQLPQLE SPKIQQDNSN CNSLPYGTSN IDNNSSHNAN LQQSNIAHEE
301: QLNQGNQNFS SLYMNSGNEQ VMDQVTDWRV LDKFVASQLS NEEAATASAS IQNNAKDTSN AEYQVDEEKD PKRASDMGEE YTASTSSSCQ IDLWK

Arabidopsis Description

NAC007NAC domain-containing protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.