CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03671	Canola	nucleus	95.41	95.41
CDX96362	Canola	nucleus	88.38	88.92
AT1G71930.2	Thale cress	nucleus	88.07	88.89
CDX72846	Canola	nucleus	86.85	87.38
CDX69209	Canola	cytosol, mitochondrion, nucleus	33.33	68.55
CDY72666	Canola	nucleus	30.28	60.74
TraesCS2A01G565900.1	Wheat	cytosol, nucleus, plastid	35.47	57.43
VIT_18s0072g01060.t01	Wine grape	nucleus	52.91	55.27
CDY70728	Canola	nucleus	29.97	54.75
Solyc06g065410.2.1	Tomato	nucleus	53.52	54.35
PGSC0003DMT400067086	Potato	nucleus	54.13	53.8
Solyc11g018660.1.1	Tomato	nucleus	50.46	53.05
PGSC0003DMT400002318	Potato	nucleus	50.46	52.22
CDY35029	Canola	cytosol	32.42	50.96
KRG91808	Soybean	nucleus	52.91	50.73
KRH34977	Soybean	nucleus	53.21	50.29
GSMUA_Achr6P18860_001	Banana	cytosol, nucleus, plastid	39.14	49.81
TraesCS2A01G566400.1	Wheat	nucleus	40.98	47.86
Zm00001d034984_P001	Maize	nucleus	40.06	47.29
GSMUA_Achr3P22360_001	Banana	nucleus	43.43	47.02
GSMUA_Achr7P23170_001	Banana	nucleus	35.17	46.18
CDY62781	Canola	nucleus	22.02	45.57
TraesCS2B01G627000.1	Wheat	nucleus	41.59	45.33
TraesCS2A01G566000.1	Wheat	nucleus	41.28	45.3
TraesCS2D01G576400.1	Wheat	nucleus	42.2	45.25
CDY00280	Canola	nucleus	35.47	44.62
Zm00001d050039_P001	Maize	nucleus	40.06	44.41
TraesCS2D01G576300.1	Wheat	cytosol, mitochondrion, nucleus	42.51	44.13
TraesCS2B01G627100.1	Wheat	nucleus	42.2	43.95
TraesCS2A01G566200.1	Wheat	nucleus	40.98	43.93
CDY45221	Canola	nucleus	39.45	43.88
CDY30778	Canola	nucleus	39.45	43.73
TraesCS2D01G576500.2	Wheat	nucleus	42.2	43.67
Zm00001d002934_P001	Maize	nucleus	43.73	43.6
TraesCS2A01G566100.1	Wheat	nucleus	42.51	43.57
TraesCS2D01G576200.1	Wheat	nucleus	42.2	43.53
HORVU2Hr1G126080.3	Barley	nucleus	42.51	43.44
Os08t0103900-01	Rice	nucleus	42.81	43.21
TraesCS2B01G627200.1	Wheat	nucleus	41.59	42.9
EES13158	Sorghum	nucleus	43.43	42.64
TraesCS7B01G226600.1	Wheat	nucleus	40.37	42.31
TraesCS7D01G322700.1	Wheat	nucleus	40.37	42.31
CDY47055	Canola	nucleus	42.2	42.2
TraesCS7A01G326000.1	Wheat	nucleus	40.06	41.99
EES14359	Sorghum	nucleus	42.81	41.79
CDX72580	Canola	nucleus	42.81	41.3
CDY38177	Canola	nucleus	45.26	41.0
CDX69208	Canola	nucleus	42.51	40.52
HORVU2Hr1G126040.14	Barley	nucleus	39.45	40.44
CDX75558	Canola	nucleus	42.2	40.23
TraesCS2A01G566300.1	Wheat	nucleus	39.76	40.12
CDY15987	Canola	nucleus	40.37	38.94
CDY21041	Canola	nucleus	41.9	38.81
CDX98078	Canola	nucleus	40.06	38.76
CDY26551	Canola	nucleus	40.06	38.53
CDY11382	Canola	cytosol, nucleus, plastid	37.31	37.89
CDY31249	Canola	nucleus	41.9	37.53
CDY26917	Canola	nucleus	35.17	37.34
CDY31835	Canola	nucleus	40.98	37.12
CDY46914	Canola	nucleus	40.98	37.12
CDY25087	Canola	cytosol, nucleus, peroxisome	37.0	37.12
CDX76597	Canola	cytosol, nucleus, peroxisome	37.31	36.75
Os04t0691300-00	Rice	cytosol, nucleus	32.11	36.71
CDY41554	Canola	nucleus	40.06	36.69
CDX87246	Canola	nucleus	37.61	36.61
CDX80045	Canola	nucleus	40.06	36.49
CDY16776	Canola	nucleus	37.0	36.45
CDX67870	Canola	nucleus	37.0	36.01
CDY58006	Canola	nucleus	37.61	35.34
CDY30057	Canola	nucleus	42.51	35.28
CDY30716	Canola	nucleus	38.84	35.18
CDX73267	Canola	cytosol	34.86	35.08
CDY27524	Canola	nucleus	38.53	34.62
CDY22285	Canola	nucleus	35.47	33.43
CDX90756	Canola	nucleus	33.33	32.83
CDX87372	Canola	nucleus	36.09	32.78
CDY05099	Canola	nucleus	33.33	32.73
CDX93819	Canola	nucleus	36.39	32.69
CDY71976	Canola	nucleus	34.86	32.66
CDX88550	Canola	nucleus	36.09	32.51
CDY01243	Canola	nucleus	36.7	32.34
CDY70056	Canola	nucleus	35.17	32.21
CDY00281	Canola	cytosol	1.83	8.96

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:A0A078CZD4	EnsemblPlants:CDX82202	ProteinID:CDX82202	ProteinID:CDX82202.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00137289001	InterPro:IPR003441
InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989
PANTHER:PTHR31989:SF41	SUPFAM:SSF101941	UniParc:UPI0004EED7E1	SEG:seg	:	:

Description

BnaC02g20880D

Coordinates

chrLK031827:-:1957350..1958855

Molecular Weight (calculated)

37558.6 Da

IEP (calculated)

6.648

GRAVY (calculated)

-0.835

Length

327 amino acids

Sequence
(BLAST)

001: MDNIKQSCVP PGFRFHPTEE ELVGYYLDGK INSIKSALDV IVDIDLYKME PWDIQARCKL GYEEQNEWYF FSHKDRKYPT GTRTNRATAA GFWKATGRDK
101: AVLSKNSVVG MRKTLVYYKG RAPNGRKSDW IMHEYRLQNS ELAPVQEEGW VVCRAFRKPI PNQRPLGYEP WQNQLYHVDN KNYYSSSATM NTSHHIGASS
201: SSQNLNQMVM SNNHYNANNP SSTIHQYGNI ELPQLDSPSL SPSLGTNKDQ NESLEQEEEK SFNYVDWRTL GSLLEIQATH PQNPNVLVSS LATQSYNPEQ
301: SFPSMHQNYN YEVEANIHHP FGCFPDS

Best Arabidopsis Sequence Match ( AT1G71930.2 )
(BLAST)

001: MDNIMQSSMP PGFRFHPTEE ELVGYYLDRK INSMKSALDV IVEIDLYKME PWDIQARCKL GYEEQNEWYF FSHKDRKYPT GTRTNRATAA GFWKATGRDK
101: AVLSKNSVIG MRKTLVYYKG RAPNGRKSDW IMHEYRLQNS ELAPVQEEGW VVCRAFRKPI PNQRPLGYEP WQNQLYHVES SNNYSSSVTM NTSHHIGASS
201: SSHNLNQMLM SNNHYNPNNT SSSMHQYGNI ELPQLDSPSL SPSLGTNKDQ NESFEQEEEK SFNCVDWRTL DTLLETQVIH PHNPNILMFE TQSYNPAPSF
301: PSMHQSYNEV EANIHHSLGC FPDS

Arabidopsis Description

NAC030NAC domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8W9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.