Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72666 | Canola | nucleus | 67.3 | 65.64 |
| CDY70728 | Canola | nucleus | 62.26 | 55.31 |
| CDY35029 | Canola | cytosol | 62.26 | 47.6 |
| CDY47055 | Canola | nucleus | 93.08 | 45.26 |
| CDX69208 | Canola | nucleus | 95.6 | 44.31 |
| CDX75558 | Canola | nucleus | 95.6 | 44.31 |
| CDY62781 | Canola | nucleus | 44.03 | 44.3 |
| CDX72580 | Canola | nucleus | 93.08 | 43.66 |
| CDY45221 | Canola | nucleus | 78.62 | 42.52 |
| CDY30778 | Canola | nucleus | 78.62 | 42.37 |
| Bra011667.1-P | Field mustard | nucleus | 95.6 | 40.97 |
| VIT_04s0023g03110.t01 | Wine grape | nucleus | 85.53 | 40.6 |
| CDY00280 | Canola | nucleus | 66.04 | 40.38 |
| AT4G36160.2 | Thale cress | nucleus | 94.34 | 39.37 |
| CDY38177 | Canola | nucleus | 86.79 | 38.23 |
| GSMUA_Achr11P... | Banana | nucleus | 78.62 | 37.43 |
| GSMUA_Achr8P12100_001 | Banana | nucleus | 77.99 | 37.35 |
| CDX98078 | Canola | nucleus | 74.21 | 34.91 |
| CDY15987 | Canola | nucleus | 73.58 | 34.51 |
| CDY26551 | Canola | nucleus | 73.58 | 34.41 |
| CDY26917 | Canola | nucleus | 65.41 | 33.77 |
| CDY21041 | Canola | nucleus | 74.21 | 33.43 |
| CDX82202 | Canola | nucleus | 68.55 | 33.33 |
| CDY03671 | Canola | nucleus | 67.92 | 33.03 |
| CDX96362 | Canola | nucleus | 67.3 | 32.92 |
| CDX72846 | Canola | nucleus | 67.3 | 32.92 |
| CDY11382 | Canola | cytosol, nucleus, plastid | 66.04 | 32.61 |
| CDY31249 | Canola | nucleus | 74.84 | 32.6 |
| CDY46914 | Canola | nucleus | 72.96 | 32.13 |
| CDY16776 | Canola | nucleus | 66.67 | 31.93 |
| CDY31835 | Canola | nucleus | 72.33 | 31.86 |
| CDX87246 | Canola | nucleus | 67.3 | 31.85 |
| CDX73267 | Canola | cytosol | 64.78 | 31.69 |
| CDX76597 | Canola | cytosol, nucleus, peroxisome | 66.04 | 31.63 |
| CDY25087 | Canola | cytosol, nucleus, peroxisome | 64.78 | 31.6 |
| CDY58006 | Canola | nucleus | 67.92 | 31.03 |
| CDX67870 | Canola | nucleus | 64.78 | 30.65 |
| CDY41554 | Canola | nucleus | 68.55 | 30.53 |
| CDX80045 | Canola | nucleus | 68.55 | 30.36 |
| CDY30057 | Canola | nucleus | 74.84 | 30.2 |
| CDX90756 | Canola | nucleus | 62.89 | 30.12 |
| CDY05099 | Canola | nucleus | 62.89 | 30.03 |
| CDY27524 | Canola | nucleus | 68.55 | 29.95 |
| CDY30716 | Canola | nucleus | 67.92 | 29.92 |
| CDY22285 | Canola | nucleus | 62.89 | 28.82 |
| CDY71976 | Canola | nucleus | 62.26 | 28.37 |
| CDX87372 | Canola | nucleus | 63.52 | 28.06 |
| CDX93819 | Canola | nucleus | 64.15 | 28.02 |
| CDX88550 | Canola | nucleus | 63.52 | 27.82 |
| CDY01243 | Canola | nucleus | 64.78 | 27.76 |
| CDY70056 | Canola | nucleus | 62.26 | 27.73 |
| CDY00281 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:A0A078BZ05 | EnsemblPlants:CDX69209 | ProteinID:CDX69209 | ProteinID:CDX69209.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00131012001 | InterPro:IPR003441 |
| InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31989 |
| PANTHER:PTHR31989:SF107 | SUPFAM:SSF101941 | UniParc:UPI0004EE9F9F | : | : | : |
Description
BnaC01g02440D
Coordinates
chrLK031789:-:3463380..3464048
Molecular Weight (calculated)
18762.2 Da
IEP (calculated)
9.211
GRAVY (calculated)
-0.835
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MESVDQSCSV PPGFRFHPTD EELVGYYLRK KVASQKIDLD VIRDIDLYRI EPWDLQEKCR IGYEERNEWY FFSHKDKKYP TGTRTNRATI AGFWKATGRD
101: KAVYDKSKLI GMRKTLVFYK GRAPNGQKTD WIMHEYRLES DENAPPQGKL YGTFFSWGL
101: KAVYDKSKLI GMRKTLVFYK GRAPNGQKTD WIMHEYRLES DENAPPQGKL YGTFFSWGL
001: MEPMESCSVP PGFRFHPTDE ELVGYYLRKK IASQKIDLDV IRDIDLYRIE PWDLQEQCRI GYEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK
101: AVYDKTKLIG MRKTLVFYKG RAPNGKKSDW IMHEYRLESD ENAPPQEEGW VVCRAFKKRA TGQAKNTETW SSSYFYDEVA PNGVNSVMDP IDYISKQQHN
201: IFGKGLMCKQ ELEGMVDGIN YIQSNQFIQL PQLQSPSLPL MKRPSSSMSI TSMDNNYNYK LPLADEESFE SFIRGEDRRK KKKQVMMTGN WRELDKFVAS
301: QLMSQEDNGT SSFAGHHIVN EDKNNNDVEM DSSMFLSERE EENRFVSEFL STNSDYDIGI CVFDN
101: AVYDKTKLIG MRKTLVFYKG RAPNGKKSDW IMHEYRLESD ENAPPQEEGW VVCRAFKKRA TGQAKNTETW SSSYFYDEVA PNGVNSVMDP IDYISKQQHN
201: IFGKGLMCKQ ELEGMVDGIN YIQSNQFIQL PQLQSPSLPL MKRPSSSMSI TSMDNNYNYK LPLADEESFE SFIRGEDRRK KKKQVMMTGN WRELDKFVAS
301: QLMSQEDNGT SSFAGHHIVN EDKNNNDVEM DSSMFLSERE EENRFVSEFL STNSDYDIGI CVFDN
Arabidopsis Description
NAC037VND1 [Source:UniProtKB/TrEMBL;Acc:A0A178VM15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.