Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69209 | Canola | cytosol, mitochondrion, nucleus | 44.3 | 44.03 |
| CDY72666 | Canola | nucleus | 44.94 | 43.56 |
| CDY70728 | Canola | nucleus | 45.57 | 40.22 |
| CDY35029 | Canola | cytosol | 47.47 | 36.06 |
| CDX90756 | Canola | nucleus | 56.33 | 26.81 |
| CDY05099 | Canola | nucleus | 56.33 | 26.73 |
| CDY00280 | Canola | nucleus | 43.04 | 26.15 |
| CDY11382 | Canola | cytosol, nucleus, plastid | 53.16 | 26.09 |
| CDY26917 | Canola | nucleus | 50.0 | 25.65 |
| CDY25087 | Canola | cytosol, nucleus, peroxisome | 52.53 | 25.46 |
| CDX76597 | Canola | cytosol, nucleus, peroxisome | 53.16 | 25.3 |
| CDX67870 | Canola | nucleus | 52.53 | 24.7 |
| CDY45221 | Canola | nucleus | 44.94 | 24.15 |
| CDY30778 | Canola | nucleus | 44.94 | 24.07 |
| CDX73267 | Canola | cytosol | 48.73 | 23.69 |
| CDX98078 | Canola | nucleus | 50.63 | 23.67 |
| CDY47055 | Canola | nucleus | 48.73 | 23.55 |
| CDY15987 | Canola | nucleus | 50.0 | 23.3 |
| CDY26551 | Canola | nucleus | 50.0 | 23.24 |
| CDX69208 | Canola | nucleus | 49.37 | 22.74 |
| CDX75558 | Canola | nucleus | 49.37 | 22.74 |
| CDX72580 | Canola | nucleus | 48.73 | 22.71 |
| CDY41554 | Canola | nucleus | 51.27 | 22.69 |
| CDX80045 | Canola | nucleus | 51.27 | 22.56 |
| CDY21041 | Canola | nucleus | 50.0 | 22.38 |
| CDY27524 | Canola | nucleus | 51.27 | 22.25 |
| CDX96362 | Canola | nucleus | 45.57 | 22.15 |
| CDX72846 | Canola | nucleus | 45.57 | 22.15 |
| CDY03671 | Canola | nucleus | 45.57 | 22.02 |
| CDX82202 | Canola | nucleus | 45.57 | 22.02 |
| CDX93819 | Canola | nucleus | 50.63 | 21.98 |
| CDY31249 | Canola | nucleus | 50.63 | 21.92 |
| CDY31835 | Canola | nucleus | 50.0 | 21.88 |
| CDY22285 | Canola | nucleus | 47.47 | 21.61 |
| CDY46914 | Canola | nucleus | 49.37 | 21.61 |
| CDY01243 | Canola | nucleus | 50.63 | 21.56 |
| CDY71976 | Canola | nucleus | 47.47 | 21.49 |
| CDX87246 | Canola | nucleus | 44.94 | 21.13 |
| CDX87372 | Canola | nucleus | 48.1 | 21.11 |
| CDY16776 | Canola | nucleus | 44.3 | 21.08 |
| CDY38177 | Canola | nucleus | 48.1 | 21.05 |
| CDY70056 | Canola | nucleus | 47.47 | 21.01 |
| CDX88550 | Canola | nucleus | 48.1 | 20.94 |
| CDY30057 | Canola | nucleus | 50.0 | 20.05 |
| CDY58006 | Canola | nucleus | 43.67 | 19.83 |
| CDY30716 | Canola | nucleus | 44.94 | 19.67 |
| CDY00281 | Canola | cytosol | 1.27 | 2.99 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:A0A078JDW6 | UniProt:A0A078JDW6 | InterPro:BRN1/BRN2 | EnsemblPlants:CDY62781 |
| ProteinID:CDY62781 | ProteinID:CDY62781.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00037593001 |
| InterPro:IPR003441 | InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 |
| PANTHER:PTHR31989 | PANTHER:PTHR31989:SF18 | SUPFAM:SSF101941 | UniParc:UPI0004EEC4F2 | SEG:seg | : |
Description
BnaCnng40940DBnaCnng40940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JDW6]
Coordinates
chrLK034191:+:26096..27165
Molecular Weight (calculated)
18262.6 Da
IEP (calculated)
7.636
GRAVY (calculated)
-0.775
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSSNGGVS PGFRLHPTDE ELLHYYLKTR ILPTSLRWKT NGISSAKRIE NTRPGQGQTV RATHEGFWKA TGRDKCIRNS YQKIGMRKTL VFYKRRAHHG
101: QKTDWIMHEY RLEDADDPQR NPSMDWVACE DVFSEVIIDV IADVDDVLNG ENHMDARC
101: QKTDWIMHEY RLEDADDPQR NPSMDWVACE DVFSEVIIDV IADVDDVLNG ENHMDARC
001: MSSSNGGVPP GFRFHPTDEE LLHYYLKKKI SYEKFEMEVI KEVDLNKIEP WDLQDRCKIG STPQNEWYFF SHKDRKYPTG SRTNRATHSG FWKATGRDKC
101: IRNSYKKIGM RKTLVFYKGR APHGQKTDWI MHEYRIEDTE DDPCEDGWVV CRVFKKKNLF KVGNDVGSNI SNNRLEARSF IRRESPYQGI SMFELNKPEE
201: ISVHQYPQPP MFQPHHKPLS IGYDYSLALL PRESEYQQAC QPSGVEVGTC KAVSEWGIVN CNMVSHEDSS RAMRFEDDGN NTSSTVQPPS NLLSLRGENG
301: FLGLF
101: IRNSYKKIGM RKTLVFYKGR APHGQKTDWI MHEYRIEDTE DDPCEDGWVV CRVFKKKNLF KVGNDVGSNI SNNRLEARSF IRRESPYQGI SMFELNKPEE
201: ISVHQYPQPP MFQPHHKPLS IGYDYSLALL PRESEYQQAC QPSGVEVGTC KAVSEWGIVN CNMVSHEDSS RAMRFEDDGN NTSSTVQPPS NLLSLRGENG
301: FLGLF
Arabidopsis Description
BRN1NAC015 [Source:UniProtKB/TrEMBL;Acc:A0A178W4M7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.