Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87372 | Canola | nucleus | 98.35 | 99.17 |
| Bra035127.1-P | Field mustard | nucleus | 97.52 | 98.61 |
| CDY70728 | Canola | nucleus | 48.21 | 97.77 |
| CDY71976 | Canola | nucleus | 87.33 | 90.83 |
| CDY70056 | Canola | nucleus | 88.15 | 89.64 |
| CDY22285 | Canola | nucleus | 85.12 | 89.05 |
| VIT_19s0085g01210.t01 | Wine grape | nucleus | 57.02 | 66.35 |
| CDY72666 | Canola | nucleus | 29.48 | 65.64 |
| GSMUA_Achr2P20020_001 | Banana | cytosol, nucleus, plastid | 50.69 | 64.79 |
| CDX69209 | Canola | cytosol, mitochondrion, nucleus | 27.82 | 63.52 |
| Os06t0530400-01 | Rice | cytosol, nucleus, peroxisome | 33.88 | 60.89 |
| PGSC0003DMT400025026 | Potato | nucleus | 54.27 | 60.8 |
| KRH13825 | Soybean | cytosol, nucleus, peroxisome | 54.55 | 60.74 |
| GSMUA_Achr10P... | Banana | nucleus | 51.52 | 60.32 |
| KRH43624 | Soybean | cytosol, nucleus, peroxisome | 53.72 | 59.45 |
| Solyc12g017400.1.1 | Tomato | nucleus | 52.07 | 59.25 |
| CDY35029 | Canola | cytosol | 31.68 | 55.29 |
| GSMUA_Achr10P... | Banana | nucleus | 43.53 | 54.86 |
| KXG20105 | Sorghum | cytosol, nucleus, plastid | 49.31 | 50.42 |
| Zm00001d046126_P001 | Maize | cytosol, nucleus, plastid | 49.04 | 49.86 |
| GSMUA_Achr3P03500_001 | Banana | nucleus | 29.48 | 49.31 |
| Zm00001d037029_P001 | Maize | nucleus | 49.04 | 48.63 |
| CDY62781 | Canola | nucleus | 20.94 | 48.1 |
| TraesCS7D01G329200.1 | Wheat | nucleus | 48.76 | 48.1 |
| TraesCS7A01G349500.1 | Wheat | nucleus | 48.48 | 47.83 |
| Os02t0252200-01 | Rice | nucleus | 47.11 | 47.63 |
| HORVU7Hr1G079500.1 | Barley | nucleus | 48.48 | 47.57 |
| TraesCS7B01G233300.1 | Wheat | nucleus | 48.21 | 47.04 |
| EES04857 | Sorghum | nucleus | 43.8 | 46.22 |
| Zm00001d016119_P001 | Maize | cytosol, nucleus, plastid | 44.08 | 45.85 |
| CDY26917 | Canola | nucleus | 36.64 | 43.18 |
| CDY45221 | Canola | nucleus | 33.88 | 41.84 |
| CDY30778 | Canola | nucleus | 33.88 | 41.69 |
| CDX73267 | Canola | cytosol | 36.91 | 41.23 |
| CDY11382 | Canola | cytosol, nucleus, plastid | 36.09 | 40.68 |
| CDY00280 | Canola | nucleus | 28.93 | 40.38 |
| CDX90756 | Canola | nucleus | 36.36 | 39.76 |
| CDY05099 | Canola | nucleus | 36.36 | 39.64 |
| CDY25087 | Canola | cytosol, nucleus, peroxisome | 35.54 | 39.57 |
| CDX76597 | Canola | cytosol, nucleus, peroxisome | 36.09 | 39.46 |
| CDX80045 | Canola | nucleus | 38.84 | 39.28 |
| CDY41554 | Canola | nucleus | 38.29 | 38.94 |
| CDX93819 | Canola | nucleus | 38.84 | 38.74 |
| CDX67870 | Canola | nucleus | 35.54 | 38.39 |
| CDY01243 | Canola | nucleus | 39.12 | 38.27 |
| CDY27524 | Canola | nucleus | 38.29 | 38.19 |
| CDX96362 | Canola | nucleus | 33.61 | 37.54 |
| OQU76499 | Sorghum | nucleus | 29.48 | 37.41 |
| CDX72846 | Canola | nucleus | 33.33 | 37.23 |
| CDY47055 | Canola | nucleus | 32.51 | 36.09 |
| CDX82202 | Canola | nucleus | 32.51 | 36.09 |
| CDY03671 | Canola | nucleus | 32.51 | 36.09 |
| CDY46914 | Canola | nucleus | 35.54 | 35.73 |
| CDY31835 | Canola | nucleus | 35.54 | 35.73 |
| CDX75558 | Canola | nucleus | 33.61 | 35.57 |
| CDX69208 | Canola | nucleus | 33.33 | 35.28 |
| CDX72580 | Canola | nucleus | 32.78 | 35.1 |
| CDY26551 | Canola | nucleus | 32.23 | 34.41 |
| CDY38177 | Canola | nucleus | 34.16 | 34.35 |
| CDY21041 | Canola | nucleus | 33.33 | 34.28 |
| CDY15987 | Canola | nucleus | 31.96 | 34.22 |
| CDX98078 | Canola | nucleus | 31.68 | 34.02 |
| CDY31249 | Canola | nucleus | 33.88 | 33.7 |
| CDY16776 | Canola | nucleus | 30.58 | 33.43 |
| CDX87246 | Canola | nucleus | 30.85 | 33.33 |
| CDY58006 | Canola | nucleus | 30.58 | 31.9 |
| CDY30057 | Canola | nucleus | 34.16 | 31.47 |
| CDY30716 | Canola | nucleus | 31.13 | 31.3 |
| CDY00281 | Canola | cytosol | 1.65 | 8.96 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:A0A078DH82 | EnsemblPlants:CDX88550 | ProteinID:CDX88550 | ProteinID:CDX88550.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0048829 |
| EnsemblPlantsGene:GSBRNA2T00148111001 | InterPro:IPR003441 | InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 |
| PFscan:PS51005 | PANTHER:PTHR31989 | PANTHER:PTHR31989:SF16 | InterPro:SMB | SUPFAM:SSF101941 | UniParc:UPI0004EEC517 |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g39940D
Coordinates
chrLK031855:-:1606516..1608418
Molecular Weight (calculated)
41698.2 Da
IEP (calculated)
7.105
GRAVY (calculated)
-0.960
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIGSSSTVA GGGQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPIDLDVIR EVDLNKLEPW DLKEKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDNE NEIQEDGWVV CRVFKKKNHF RGFHQEQDQD HHHHQYISTN NDHDHHHHQH
201: HTESNSNNHS SQIPLSLDHH HHNMGRQIHM PLHEFSNTLS HGSMHLPQLF SPDSAAAAAA AAAQPFVLSI NTTDIECSQN LLRLTSNNNN YGGDWSFLDK
301: LLTTTNMNQQ QQVQNHQAKC FGDSSNNDDQ AVTHDHLGNN NNGNERFPFH YLGNDANLLK FPK
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDNE NEIQEDGWVV CRVFKKKNHF RGFHQEQDQD HHHHQYISTN NDHDHHHHQH
201: HTESNSNNHS SQIPLSLDHH HHNMGRQIHM PLHEFSNTLS HGSMHLPQLF SPDSAAAAAA AAAQPFVLSI NTTDIECSQN LLRLTSNNNN YGGDWSFLDK
301: LLTTTNMNQQ QQVQNHQAKC FGDSSNNDDQ AVTHDHLGNN NNGNERFPFH YLGNDANLLK FPK
001: MEIGSSSTVA GGGQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPIDLDVIR EVDLNKLEPW ELKEKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDSE NEIQEDGWVV CRVFKKKNHF RGFHQEQEQD HHHHHQYIST NNDHDHHHHI
201: DSNSNNHSPL ILHPLDHHHH HHHIGRQIHM PLHEFANTLS HGSMHLPQLF SPDSAAAAAA AAASAQPFVS PINTTDIECS QNLLRLTSNN NYGGDWSFLD
301: KLLTTGNMNQ QQQQQVQNHQ AKCFGDLSNN DNNDQADHLG NNNGGSSSSP VNQRFPFHYL GNDANLLKFP K
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDSE NEIQEDGWVV CRVFKKKNHF RGFHQEQEQD HHHHHQYIST NNDHDHHHHI
201: DSNSNNHSPL ILHPLDHHHH HHHIGRQIHM PLHEFANTLS HGSMHLPQLF SPDSAAAAAA AAASAQPFVS PINTTDIECS QNLLRLTSNN NYGGDWSFLD
301: KLLTTGNMNQ QQQQQVQNHQ AKCFGDLSNN DNNDQADHLG NNNGGSSSSP VNQRFPFHYL GNDANLLKFP K
Arabidopsis Description
SMBProtein SOMBRERO [Source:UniProtKB/Swiss-Prot;Acc:Q9MA17]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.