Factsheet for GSMUA_Achr10P21750_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70728	Canola	nucleus	44.1	70.95
Os06t0530400-01	Rice	cytosol, nucleus, peroxisome	43.4	61.88
GSMUA_Achr10P...	Banana	nucleus	64.58	60.0
GSMUA_Achr2P20020_001	Banana	cytosol, nucleus, plastid	58.68	59.51
VIT_19s0085g01210.t01	Wine grape	nucleus	61.81	57.05
KRH13825	Soybean	cytosol, nucleus, peroxisome	59.03	52.15
KRH43624	Soybean	cytosol, nucleus, peroxisome	59.38	52.13
Solyc12g017400.1.1	Tomato	nucleus	56.25	50.78
PGSC0003DMT400025026	Potato	nucleus	56.94	50.62
GSMUA_AchrUn_...	Banana	nucleus	44.1	49.8
KXG20105	Sorghum	cytosol, nucleus, plastid	59.72	48.45
HORVU7Hr1G079500.1	Barley	nucleus	62.15	48.38
TraesCS7D01G329200.1	Wheat	nucleus	61.81	48.37
EES04857	Sorghum	nucleus	57.64	48.26
TraesCS7A01G349500.1	Wheat	nucleus	61.11	47.83
GSMUA_Achr3P03500_001	Banana	nucleus	35.76	47.47
TraesCS7B01G233300.1	Wheat	nucleus	61.11	47.31
Zm00001d016119_P001	Maize	cytosol, nucleus, plastid	56.94	46.99
Os02t0252200-01	Rice	nucleus	57.64	46.24
Zm00001d046126_P001	Maize	cytosol, nucleus, plastid	57.29	46.22
CDY71976	Canola	nucleus	55.9	46.13
Bra008423.1-P	Field mustard	nucleus	55.56	45.85
CDY22285	Canola	nucleus	54.86	45.53
Zm00001d037029_P001	Maize	nucleus	57.29	45.08
CDY70056	Canola	nucleus	54.86	44.26
Bra035127.1-P	Field mustard	nucleus	54.86	44.01
Bra003602.1-P	Field mustard	nucleus	54.51	43.98
CDX87372	Canola	nucleus	54.86	43.89
CDX88550	Canola	nucleus	54.86	43.53
GSMUA_Achr6P18860_001	Banana	cytosol, nucleus, plastid	38.19	42.8
AT1G79580.4	Thale cress	nucleus	54.51	42.32
GSMUA_Achr7P23170_001	Banana	nucleus	36.11	41.77
GSMUA_Achr3P12230_001	Banana	nucleus	48.61	41.3
GSMUA_Achr8P11590_001	Banana	cytosol	43.06	38.99
GSMUA_Achr7P05980_001	Banana	nucleus	46.88	38.79
GSMUA_Achr9P24450_001	Banana	nucleus	47.22	38.75
GSMUA_Achr11P...	Banana	nucleus	42.01	38.17
GSMUA_Achr3P22360_001	Banana	nucleus	39.24	37.42
GSMUA_Achr6P28890_001	Banana	nucleus	40.28	36.36
GSMUA_Achr11P...	Banana	nucleus	42.01	36.23
GSMUA_Achr8P12100_001	Banana	nucleus	41.32	35.84
GSMUA_Achr11P...	Banana	nucleus	43.75	35.8
GSMUA_Achr7P06640_001	Banana	nucleus	41.32	35.0
OQU76499	Sorghum	nucleus	34.72	34.97
GSMUA_Achr2P05640_001	Banana	cytosol, nucleus, plastid	38.54	34.69
GSMUA_Achr6P36840_001	Banana	nucleus	41.32	32.25

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0048829	EnsemblPlantsGene:GSMUA_Achr10G21750_001	EnsemblPlants:GSMUA_Achr10P21750_001	EnsemblPlants:GSMUA_Achr10T21750_001	InterPro:IPR003441	InterPro:IPR036093
UniProt:M0RKA0	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989
PANTHER:PTHR31989:SF16	InterPro:SMB	SUPFAM:SSF101941	UniParc:UPI000295558A	SEG:seg	:

Description

Putative Protein SOMBRERO [Source:GMGC_GENE;Acc:GSMUA_Achr10G21750_001]

Coordinates

chr10:+:27209892..27211035

Molecular Weight (calculated)

33666.2 Da

IEP (calculated)

8.904

GRAVY (calculated)

-0.632

Length

288 amino acids

Sequence
(BLAST)

001: MITSNRQLMV PPGFRFHPTD EELLYYYLRK KLAYEAIDLD IIGDVDLNKL EPWDLKDKCR IESGPQNEWY FFCRKDKKYP TGTRTNRATA AGFWKATGRD
101: KAIHLGNSKR IGMRKTLVFY TGRAPHGRKT DWIMHEYRLD RETSEVQLVN YELRGFWFCI VQEDAWVVCK VFQKKSHPTH ILPETVVEED QFDSSARSPR
201: TMERKQNFHP PSDFSFNVSM HLPQLLSSEP FVSPPVPPVS MRSTLGGCVT LPQERLNWDW SILDKLLASH QNLDQILQSK SNPPTQFR

Best Arabidopsis Sequence Match ( AT1G79580.3 )
(BLAST)

001: MEIGSSSTVA GGGQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPIDLDVIR EVDLNKLEPW ELKEKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDSE NEIQEDGWVV CRVFKKKNHF RGFHQEQEQD HHHHHQYIST NNDHDHHHHI
201: DSNSNNHSPL ILHPLDHHHH HHHIGRQIHM PLHEFANTLS HGSMHLPQLF SPDSAAAAAA AAASAQPFVS PINTTDIECS QNLLRLTSNN NYGGDWSFLD
301: KLLTTGNMNQ QQQQQVQNHQ AKCFGDLSNN DNNDQADHLG NNNGGSSSSP VNQRFPFHYL GNDANLLKFP K

Arabidopsis Description

SMBProtein SOMBRERO [Source:UniProtKB/Swiss-Prot;Acc:Q9MA17]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.