Factsheet for Bra003602.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70056	Canola	nucleus	98.6	98.6
Bra008423.1-P	Field mustard	nucleus	87.68	89.68
Bra035127.1-P	Field mustard	nucleus	89.08	88.58
AT1G79580.4	Thale cress	nucleus	91.6	88.14
VIT_19s0085g01210.t01	Wine grape	nucleus	56.58	64.74
GSMUA_Achr2P20020_001	Banana	cytosol, nucleus, plastid	50.7	63.73
Os06t0530400-01	Rice	cytosol, nucleus, peroxisome	33.89	59.9
PGSC0003DMT400025026	Potato	nucleus	54.06	59.57
KRH13825	Soybean	cytosol, nucleus, peroxisome	54.06	59.2
GSMUA_Achr10P...	Banana	nucleus	51.26	59.03
KRH43624	Soybean	cytosol, nucleus, peroxisome	53.5	58.23
Solyc12g017400.1.1	Tomato	nucleus	51.54	57.68
GSMUA_Achr10P...	Banana	nucleus	43.98	54.51
KXG20105	Sorghum	cytosol, nucleus, plastid	49.86	50.14
Zm00001d046126_P001	Maize	cytosol, nucleus, plastid	49.58	49.58
Zm00001d037029_P001	Maize	nucleus	49.58	48.36
GSMUA_Achr3P03500_001	Banana	nucleus	28.85	47.47
TraesCS7D01G329200.1	Wheat	nucleus	48.74	47.28
TraesCS7A01G349500.1	Wheat	nucleus	48.46	47.01
Os02t0252200-01	Rice	nucleus	47.06	46.8
HORVU7Hr1G079500.1	Barley	nucleus	48.46	46.76
TraesCS7B01G233300.1	Wheat	nucleus	48.46	46.51
EES04857	Sorghum	nucleus	43.7	45.35
Zm00001d016119_P001	Maize	cytosol, nucleus, plastid	43.7	44.7
Bra039915.1-P	Field mustard	nucleus	31.65	41.85
Bra010183.1-P	Field mustard	nucleus	35.85	41.56
Bra012065.1-P	Field mustard	nucleus	32.77	40.07
Bra007640.1-P	Field mustard	cytosol, nucleus, plastid	35.29	39.13
Bra037914.1-P	Field mustard	nucleus	36.97	38.6
Bra000709.1-P	Field mustard	nucleus	36.69	38.42
Bra004509.1-P	Field mustard	nucleus	38.38	38.16
Bra023288.1-P	Field mustard	nucleus	38.1	37.36
OQU76499	Sorghum	nucleus	29.69	37.06
Bra003478.1-P	Field mustard	nucleus	34.73	36.9
Bra040486.1-P	Field mustard	nucleus	37.25	36.54
Bra016098.1-P	Field mustard	nucleus	32.21	35.6
Bra007996.1-P	Field mustard	nucleus	31.93	34.86
Bra011667.1-P	Field mustard	nucleus	34.45	33.15
Bra017750.1-P	Field mustard	nucleus	34.17	32.97
Bra026981.1-P	Field mustard	nucleus	31.37	32.94
Bra035896.1-P	Field mustard	nucleus	29.69	31.93
Bra010077.1-P	Field mustard	nucleus	30.81	31.7
Bra029266.1-P	Field mustard	nucleus	31.09	30.49
Bra016783.1-P	Field mustard	nucleus	33.05	30.41
Bra027024.1-P	Field mustard	nucleus	33.33	30.36
Bra019750.1-P	Field mustard	nucleus	32.77	29.77
Bra029264.1-P	Field mustard	nucleus	22.41	26.32

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	EnsemblPlantsGene:Bra003602	EnsemblPlants:Bra003602.1	EnsemblPlants:Bra003602.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0048829	InterPro:IPR003441	InterPro:IPR036093
UniProt:M4CHB9	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989
PANTHER:PTHR31989:SF16	InterPro:SMB	SUPFAM:SSF101941	UniParc:UPI0002541372	SEG:seg	:

Description

AT1G79580 (E=1e-108) SMB | SMB (SOMBRERO); transcription factor

Coordinates

chrA07:+:14014416..14016584

Molecular Weight (calculated)

41249.6 Da

IEP (calculated)

7.279

GRAVY (calculated)

-1.029

Length

357 amino acids

Sequence
(BLAST)

001: MEIGSSSTVA GGGQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPTDLDVIR EVDLNKLEPW ELKEKCRIGS GPQNEWYFFS HKDKKYPTGI RTNRATAAGF
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR VPHGHKTEWI MHEYRLDDNE NEIQEDGWVV CRVFKKKNHF RGFHQEQDQD HHHDHQYIST NNDDHQQQHH
201: NESNPNNHSS LISHSLDHHQ NHHHMGRQIH MPLHEFANTL SHGSMHLPQL FSPDSAQPFV SSINTTDIEC SQNLLRLTSN NNYGGDWSFL DKLLTTTNMN
301: HQQQQQVQNH QAKCFGDSSN NDQAVTHDNG GSSSSPNNQR FPFHYLGNNA NLLKFPK

Best Arabidopsis Sequence Match ( AT1G79580.3 )
(BLAST)

001: MEIGSSSTVA GGGQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPIDLDVIR EVDLNKLEPW ELKEKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDSE NEIQEDGWVV CRVFKKKNHF RGFHQEQEQD HHHHHQYIST NNDHDHHHHI
201: DSNSNNHSPL ILHPLDHHHH HHHIGRQIHM PLHEFANTLS HGSMHLPQLF SPDSAAAAAA AAASAQPFVS PINTTDIECS QNLLRLTSNN NYGGDWSFLD
301: KLLTTGNMNQ QQQQQVQNHQ AKCFGDLSNN DNNDQADHLG NNNGGSSSSP VNQRFPFHYL GNDANLLKFP K

Arabidopsis Description

SMBProtein SOMBRERO [Source:UniProtKB/Swiss-Prot;Acc:Q9MA17]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.