Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- peroxisome 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra002458.1-P | |
| Bra005398.1-P | |
| Bra020236.1-P | |
| Bra021926.1-P | |
| Bra032394.1-P |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38177 | Canola | nucleus | 100.0 | 74.79 |
| AT2G18060.1 | Thale cress | nucleus | 86.3 | 63.84 |
| Bra012065.1-P | Field mustard | nucleus | 62.22 | 57.53 |
| KRH76680 | Soybean | nucleus | 72.22 | 56.69 |
| PGSC0003DMT400009136 | Potato | nucleus | 72.22 | 56.2 |
| Solyc02g084350.2.1 | Tomato | nucleus | 72.59 | 56.16 |
| Bra017750.1-P | Field mustard | nucleus | 75.93 | 55.41 |
| Bra011667.1-P | Field mustard | nucleus | 74.81 | 54.45 |
| GSMUA_Achr11P... | Banana | nucleus | 65.93 | 53.29 |
| GSMUA_Achr8P12100_001 | Banana | nucleus | 64.07 | 52.11 |
| KRH28776 | Soybean | endoplasmic reticulum, golgi, mitochondrion | 72.59 | 51.58 |
| Bra007996.1-P | Field mustard | nucleus | 52.22 | 43.12 |
| Bra016098.1-P | Field mustard | nucleus | 51.11 | 42.72 |
| Bra026981.1-P | Field mustard | nucleus | 53.33 | 42.35 |
| Bra007640.1-P | Field mustard | cytosol, nucleus, plastid | 46.67 | 39.13 |
| Bra016783.1-P | Field mustard | nucleus | 55.56 | 38.66 |
| Bra019750.1-P | Field mustard | nucleus | 55.93 | 38.42 |
| Bra010183.1-P | Field mustard | nucleus | 43.33 | 37.99 |
| Bra035896.1-P | Field mustard | nucleus | 45.93 | 37.35 |
| Bra040486.1-P | Field mustard | nucleus | 49.26 | 36.54 |
| Bra004509.1-P | Field mustard | nucleus | 48.52 | 36.49 |
| Bra027024.1-P | Field mustard | nucleus | 52.96 | 36.48 |
| Bra010077.1-P | Field mustard | nucleus | 46.67 | 36.31 |
| Bra003478.1-P | Field mustard | nucleus | 45.19 | 36.31 |
| Bra029266.1-P | Field mustard | nucleus | 47.04 | 34.89 |
| Bra023288.1-P | Field mustard | nucleus | 46.3 | 34.34 |
| Bra037914.1-P | Field mustard | nucleus | 42.22 | 33.33 |
| Bra035127.1-P | Field mustard | nucleus | 44.07 | 33.15 |
| Bra008423.1-P | Field mustard | nucleus | 42.22 | 32.66 |
| Bra000709.1-P | Field mustard | nucleus | 40.74 | 32.26 |
| Bra003602.1-P | Field mustard | nucleus | 41.85 | 31.65 |
| Bra029264.1-P | Field mustard | nucleus | 31.11 | 27.63 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | EnsemblPlantsGene:Bra039915 | EnsemblPlants:Bra039915.1 | EnsemblPlants:Bra039915.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009987 | GO:GO:0010200 | GO:GO:0030154 |
| GO:GO:0043565 | GO:GO:0044212 | GO:GO:0048759 | GO:GO:1901348 | GO:GO:1990110 | InterPro:IPR003441 |
| InterPro:IPR036093 | UniProt:M4FFP1 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 |
| PANTHER:PTHR31989 | PANTHER:PTHR31989:SF107 | SUPFAM:SSF101941 | UniParc:UPI0002541185 | SEG:seg | : |
Description
AT2G18060 (E=8e-130) VND1, ANAC037 | VND1 (VASCULAR RELATED NAC-DOMAIN PROTEIN 1); transcription factor
Coordinates
chrA07:+:1681144..1683882
Molecular Weight (calculated)
31438.9 Da
IEP (calculated)
6.519
GRAVY (calculated)
-0.757
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MESCSVPPGF RFHPTDEELV GYYLRKKVAS QKIDLDVIRD IDLYKIEPWD LQERCRIGHE EQNEWYFFSH KDKKYPTGTR TNRATMTGFW KATGRDKAVY
101: DKTKLIGMRK TLVFYKGRAP NGQKSDWIIH EYRLESDENA LPQEEGWVVC RAFKKRATGQ TKNTETWSSS YFYDEAVSSG VNSIIDPTEY IYNQKHDIFG
201: KGFTCKQEIE GMVDDLNYMQ SYHQFIQLPQ LQSPSLPVMK RPSSSMSISS MDNNSNYIIS LDDEASFSQL
101: DKTKLIGMRK TLVFYKGRAP NGQKSDWIIH EYRLESDENA LPQEEGWVVC RAFKKRATGQ TKNTETWSSS YFYDEAVSSG VNSIIDPTEY IYNQKHDIFG
201: KGFTCKQEIE GMVDDLNYMQ SYHQFIQLPQ LQSPSLPVMK RPSSSMSISS MDNNSNYIIS LDDEASFSQL
001: MEPMESCSVP PGFRFHPTDE ELVGYYLRKK IASQKIDLDV IRDIDLYRIE PWDLQEQCRI GYEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK
101: AVYDKTKLIG MRKTLVFYKG RAPNGKKSDW IMHEYRLESD ENAPPQEEGW VVCRAFKKRA TGQAKNTETW SSSYFYDEVA PNGVNSVMDP IDYISKQQHN
201: IFGKGLMCKQ ELEGMVDGIN YIQSNQFIQL PQLQSPSLPL MKRPSSSMSI TSMDNNYNYK LPLADEESFE SFIRGEDRRK KKKQVMMTGN WRELDKFVAS
301: QLMSQEDNGT SSFAGHHIVN EDKNNNDVEM DSSMFLSERE EENRFVSEFL STNSDYDIGI CVFDN
101: AVYDKTKLIG MRKTLVFYKG RAPNGKKSDW IMHEYRLESD ENAPPQEEGW VVCRAFKKRA TGQAKNTETW SSSYFYDEVA PNGVNSVMDP IDYISKQQHN
201: IFGKGLMCKQ ELEGMVDGIN YIQSNQFIQL PQLQSPSLPL MKRPSSSMSI TSMDNNYNYK LPLADEESFE SFIRGEDRRK KKKQVMMTGN WRELDKFVAS
301: QLMSQEDNGT SSFAGHHIVN EDKNNNDVEM DSSMFLSERE EENRFVSEFL STNSDYDIGI CVFDN
Arabidopsis Description
NAC037VND1 [Source:UniProtKB/TrEMBL;Acc:A0A178VM15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.