Factsheet for Bra008423.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71976	Canola	nucleus	99.14	99.14
Bra003602.1-P	Field mustard	nucleus	89.68	87.68
Bra035127.1-P	Field mustard	nucleus	89.97	87.47
AT1G79580.4	Thale cress	nucleus	89.68	84.37
VIT_19s0085g01210.t01	Wine grape	nucleus	58.74	65.71
GSMUA_Achr2P20020_001	Banana	cytosol, nucleus, plastid	51.86	63.73
Os06t0530400-01	Rice	cytosol, nucleus, peroxisome	34.96	60.4
PGSC0003DMT400025026	Potato	nucleus	55.87	60.19
GSMUA_Achr10P...	Banana	nucleus	53.3	60.0
KRH13825	Soybean	cytosol, nucleus, peroxisome	55.87	59.82
KRH43624	Soybean	cytosol, nucleus, peroxisome	55.01	58.54
Solyc12g017400.1.1	Tomato	nucleus	53.01	57.99
GSMUA_Achr10P...	Banana	nucleus	45.85	55.56
KXG20105	Sorghum	cytosol, nucleus, plastid	51.0	50.14
Zm00001d046126_P001	Maize	cytosol, nucleus, plastid	50.72	49.58
Zm00001d037029_P001	Maize	nucleus	50.72	48.36
GSMUA_Achr3P03500_001	Banana	nucleus	29.51	47.47
Os02t0252200-01	Rice	nucleus	48.71	47.35
TraesCS7D01G329200.1	Wheat	nucleus	49.86	47.28
TraesCS7A01G349500.1	Wheat	nucleus	49.57	47.01
HORVU7Hr1G079500.1	Barley	nucleus	49.57	46.76
TraesCS7B01G233300.1	Wheat	nucleus	49.28	46.24
EES04857	Sorghum	nucleus	44.99	45.64
Zm00001d016119_P001	Maize	cytosol, nucleus, plastid	44.99	44.99
Bra039915.1-P	Field mustard	nucleus	32.66	42.22
Bra010183.1-P	Field mustard	nucleus	36.96	41.88
Bra012065.1-P	Field mustard	nucleus	33.52	40.07
Bra007640.1-P	Field mustard	cytosol, nucleus, plastid	36.39	39.44
Bra004509.1-P	Field mustard	nucleus	39.54	38.44
Bra037914.1-P	Field mustard	nucleus	37.25	38.01
Bra000709.1-P	Field mustard	nucleus	36.96	37.83
Bra023288.1-P	Field mustard	nucleus	38.97	37.36
Bra040486.1-P	Field mustard	nucleus	38.68	37.09
Bra003478.1-P	Field mustard	nucleus	35.53	36.9
OQU76499	Sorghum	nucleus	30.09	36.71
Bra016098.1-P	Field mustard	nucleus	33.24	35.91
Bra007996.1-P	Field mustard	nucleus	32.38	34.56
Bra026981.1-P	Field mustard	nucleus	32.66	33.53
Bra017750.1-P	Field mustard	nucleus	35.24	33.24
Bra011667.1-P	Field mustard	nucleus	35.24	33.15
Bra035896.1-P	Field mustard	nucleus	29.8	31.33
Bra016783.1-P	Field mustard	nucleus	34.38	30.93
Bra027024.1-P	Field mustard	nucleus	34.67	30.87
Bra010077.1-P	Field mustard	nucleus	30.66	30.84
Bra019750.1-P	Field mustard	nucleus	34.1	30.28
Bra029266.1-P	Field mustard	nucleus	30.95	29.67
Bra029264.1-P	Field mustard	nucleus	22.35	25.66

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	EnsemblPlantsGene:Bra008423	EnsemblPlants:Bra008423.1	EnsemblPlants:Bra008423.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0048829	InterPro:IPR003441	InterPro:IPR036093
UniProt:M4CW26	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989
PANTHER:PTHR31989:SF16	InterPro:SMB	SUPFAM:SSF101941	UniParc:UPI00025468A3	SEG:seg	:

Description

AT1G79580 (E=3e-105) SMB | SMB (SOMBRERO); transcription factor

Coordinates

chrA02:-:15557125..15558937

Molecular Weight (calculated)

40352.6 Da

IEP (calculated)

7.368

GRAVY (calculated)

-1.014

Length

349 amino acids

Sequence
(BLAST)

001: MEIGSSSTVA GGGQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPIDLDVIR EVDLNKLEPW DLKEKSRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF
101: WKATGRDKSI HLNSSKKIEL CKTLVFYTGR APHGHKTEWI MHEYRLDDNE NEIQEDGWVV CRVFKKKNHF RGFHQEQDQD QNHHHQYIST DNDHDQHHPH
201: QHRTESKSNN HSSFVPHTLN HHHMGRQIHR PVHEFANTLS HGSMHLPQLF SPDSSQPFVS SINTTDIECS QNLLRLTSNN NYGGDWSFLD KLLTTTNMNQ
301: QVQNHQAKCF GDSSNNGNND HAVTSSSPDN QRFPFHYLGN DANLLKFPK

Best Arabidopsis Sequence Match ( AT1G79580.3 )
(BLAST)

001: MEIGSSSTVA GGGQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPIDLDVIR EVDLNKLEPW ELKEKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDSE NEIQEDGWVV CRVFKKKNHF RGFHQEQEQD HHHHHQYIST NNDHDHHHHI
201: DSNSNNHSPL ILHPLDHHHH HHHIGRQIHM PLHEFANTLS HGSMHLPQLF SPDSAAAAAA AAASAQPFVS PINTTDIECS QNLLRLTSNN NYGGDWSFLD
301: KLLTTGNMNQ QQQQQVQNHQ AKCFGDLSNN DNNDQADHLG NNNGGSSSSP VNQRFPFHYL GNDANLLKFP K

Arabidopsis Description

SMBProtein SOMBRERO [Source:UniProtKB/Swiss-Prot;Acc:Q9MA17]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.