Factsheet for TraesCS7D01G329200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G233300.1	Wheat	nucleus	98.1	97.04
TraesCS7A01G349500.1	Wheat	nucleus	96.2	96.2
HORVU7Hr1G079500.1	Barley	nucleus	93.48	92.97
KXG20105	Sorghum	cytosol, nucleus, plastid	76.36	79.15
Zm00001d046126_P001	Maize	cytosol, nucleus, plastid	74.18	76.47
Zm00001d037029_P001	Maize	nucleus	75.0	75.41
Os06t0530400-01	Rice	cytosol, nucleus, peroxisome	40.76	74.26
CDY70728	Canola	nucleus	35.6	73.18
GSMUA_Achr2P20020_001	Banana	cytosol, nucleus, plastid	51.63	66.9
VIT_19s0085g01210.t01	Wine grape	nucleus	53.8	63.46
GSMUA_Achr10P...	Banana	nucleus	53.26	63.23
GSMUA_Achr10P...	Banana	nucleus	48.37	61.81
PGSC0003DMT400025026	Potato	nucleus	52.72	59.88
KRH43624	Soybean	cytosol, nucleus, peroxisome	53.26	59.76
KRH13825	Soybean	cytosol, nucleus, peroxisome	52.45	59.2
Solyc12g017400.1.1	Tomato	nucleus	49.46	57.05
GSMUA_Achr3P03500_001	Banana	nucleus	30.43	51.61
CDY71976	Canola	nucleus	47.55	50.14
Bra008423.1-P	Field mustard	nucleus	47.28	49.86
CDY22285	Canola	nucleus	46.74	49.57
Bra035127.1-P	Field mustard	nucleus	47.83	49.03
CDY70056	Canola	nucleus	47.55	49.02
CDX87372	Canola	nucleus	47.83	48.89
CDX88550	Canola	nucleus	48.1	48.76
Bra003602.1-P	Field mustard	nucleus	47.28	48.74
OQU76499	Sorghum	nucleus	37.5	48.25
AT1G79580.4	Thale cress	nucleus	48.37	47.98
TraesCS7D01G008500.1	Wheat	nucleus	37.5	41.07
TraesCS2D01G309800.1	Wheat	nucleus	36.14	39.58
TraesCS2D01G382800.1	Wheat	cytosol, nucleus, peroxisome	36.41	39.53
TraesCS2D01G576200.1	Wheat	nucleus	33.15	38.49
TraesCS2D01G576300.1	Wheat	cytosol, mitochondrion, nucleus	32.88	38.41
TraesCS6D01G220600.1	Wheat	nucleus	36.68	38.35
TraesCS7D01G062600.1	Wheat	cytosol, nucleus, plastid	41.03	38.23
TraesCS4D01G316800.1	Wheat	nucleus	38.04	38.15
TraesCS2D01G576400.1	Wheat	nucleus	31.25	37.7
TraesCS7D01G062400.1	Wheat	nucleus	40.76	37.13
TraesCS7D01G063300.1	Wheat	cytosol, nucleus, plastid	40.49	36.97
TraesCS2D01G576500.2	Wheat	nucleus	31.25	36.39
TraesCS7D01G062100.1	Wheat	cytosol, nucleus, plastid	40.49	36.34
TraesCS7D01G322700.1	Wheat	nucleus	30.43	35.9
TraesCS7D01G062300.1	Wheat	cytosol, nucleus, plastid	39.95	35.77
TraesCS7D01G314000.2	Wheat	nucleus	39.4	35.37

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003002	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009834
GO:GO:0009987	GO:GO:0010455	GO:GO:0030154	GO:GO:0048829	InterPro:IPR003441	InterPro:IPR036093
InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF16
InterPro:SMB	SUPFAM:SSF101941	EnsemblPlantsGene:TraesCS7D01G329200	EnsemblPlants:TraesCS7D01G329200.1	SEG:seg	:

Description

No Description!

Coordinates

chr7D:-:420741638..420742946

Molecular Weight (calculated)

41200.9 Da

IEP (calculated)

6.962

GRAVY (calculated)

-0.568

Length

368 amino acids

Sequence
(BLAST)

001: MHPSGGALSV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREIDLNKL EPWDLKDRCR IGTGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD
101: KAIFLGSGSR RIGMRKTLVF YVGRAPHGKK TDWIMHEYRL DEDNVEVQED GWVVCRVFTK KSYTRGVNPA EMAGYDDDEL LHPFPVPSST AGAMQMITDQ
201: KHIMHNPGHL MQQQQQHYDF PSFDASMQLP QLMSAEHEQQ TLSSFLPGAP AAVAMSSHEL ECSQNLMKLT SSGANGMLHH GGGGGGGDPR FPGTDWSILD
301: KLLASHQNLD QLFQGKVAAA AAASMAPYQQ QHQQQLMEQL GGSSTSSMQR MPLQYLGCEA ADLLRFSK

Best Arabidopsis Sequence Match ( AT1G79580.3 )
(BLAST)

001: MEIGSSSTVA GGGQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPIDLDVIR EVDLNKLEPW ELKEKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDSE NEIQEDGWVV CRVFKKKNHF RGFHQEQEQD HHHHHQYIST NNDHDHHHHI
201: DSNSNNHSPL ILHPLDHHHH HHHIGRQIHM PLHEFANTLS HGSMHLPQLF SPDSAAAAAA AAASAQPFVS PINTTDIECS QNLLRLTSNN NYGGDWSFLD
301: KLLTTGNMNQ QQQQQVQNHQ AKCFGDLSNN DNNDQADHLG NNNGGSSSSP VNQRFPFHYL GNDANLLKFP K

Arabidopsis Description

SMBProtein SOMBRERO [Source:UniProtKB/Swiss-Prot;Acc:Q9MA17]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.