CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13825	Soybean	cytosol, nucleus, peroxisome	92.68	93.25
VIT_19s0085g01210.t01	Wine grape	nucleus	74.39	78.21
CDY70728	Canola	nucleus	42.38	77.65
GSMUA_Achr2P20020_001	Banana	cytosol, nucleus, plastid	60.98	70.42
Os06t0530400-01	Rice	cytosol, nucleus, peroxisome	41.77	67.82
GSMUA_Achr10P...	Banana	nucleus	61.89	65.48
PGSC0003DMT400025026	Potato	nucleus	63.72	64.51
Solyc12g017400.1.1	Tomato	nucleus	61.89	63.64
GSMUA_Achr10P...	Banana	nucleus	52.13	59.38
CDY22285	Canola	nucleus	59.76	56.48
CDY71976	Canola	nucleus	58.84	55.3
Bra008423.1-P	Field mustard	nucleus	58.54	55.01
KXG20105	Sorghum	cytosol, nucleus, plastid	59.15	54.65
CDX87372	Canola	nucleus	59.76	54.44
Bra035127.1-P	Field mustard	nucleus	59.45	54.32
CDY70056	Canola	nucleus	58.54	53.78
CDX88550	Canola	nucleus	59.45	53.72
Bra003602.1-P	Field mustard	nucleus	58.23	53.5
AT1G79580.4	Thale cress	nucleus	60.37	53.37
TraesCS7D01G329200.1	Wheat	nucleus	59.76	53.26
EES04857	Sorghum	nucleus	55.79	53.2
GSMUA_Achr3P03500_001	Banana	nucleus	35.06	53.0
TraesCS7A01G349500.1	Wheat	nucleus	59.45	52.99
HORVU7Hr1G079500.1	Barley	nucleus	59.76	52.97
TraesCS7B01G233300.1	Wheat	nucleus	59.76	52.69
Os02t0252200-01	Rice	nucleus	57.62	52.65
Zm00001d016119_P001	Maize	cytosol, nucleus, plastid	55.79	52.44
Zm00001d046126_P001	Maize	cytosol, nucleus, plastid	56.71	52.1
Zm00001d037029_P001	Maize	nucleus	57.32	51.37
KRG97235	Soybean	nucleus	39.63	49.06
KRG97237	Soybean	nucleus	39.33	48.68
KRH23801	Soybean	nucleus	43.29	40.92
KRH62610	Soybean	nucleus	42.38	40.76
KRH39986	Soybean	nucleus	43.9	40.68
OQU76499	Sorghum	nucleus	35.06	40.21
KRH76680	Soybean	nucleus	41.46	39.53
KRH47818	Soybean	nucleus	47.87	39.25
KRH23778	Soybean	nucleus	42.38	39.04
KRH40024	Soybean	nucleus	42.68	39.0
KRH56355	Soybean	nucleus	42.38	38.29
KRH04074	Soybean	nucleus	42.07	37.7
KRH57345	Soybean	nucleus	41.77	37.64
KRH28034	Soybean	nucleus	41.16	37.5
KRH69806	Soybean	nucleus	40.24	36.46
KRH06383	Soybean	nucleus	49.09	36.34
KRG91808	Soybean	nucleus	37.5	36.07
KRH28776	Soybean	endoplasmic reticulum, golgi, mitochondrion	41.46	35.79
KRH08100	Soybean	nucleus	39.33	35.64
KRH34977	Soybean	nucleus	37.5	35.55

Protein Annotations

EntrezGene:100789606	MapMan:15.5.17	Gene3D:3.30.310.150	EMBL:ACUP02004872	EnsemblPlantsGene:GLYMA_08G161300	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	UniProt:I1KTT9	InterPro:IPR003441	InterPro:IPR036093	EnsemblPlants:KRH43624
ProteinID:KRH43624	ProteinID:KRH43624.1	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31989	PANTHER:PTHR31989:SF112	SUPFAM:SSF101941	UniParc:UPI0002338282	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:12507922..12511581

Molecular Weight (calculated)

37777.5 Da

IEP (calculated)

7.321

GRAVY (calculated)

-0.809

Length

328 amino acids

Sequence
(BLAST)

001: MMPGNGQLTV PPGFRFHPTD EELLYYYLRK KVSYEAIDLD VIREVDLNKL EPWDLNDKCR IGSGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD
101: KAIYHTNSKR IGMRKTLVFY TGRAPHGQKT DWIMHEYRLD EDDADIQEDG WVVCRVFKKK SQNRGFQQEI EEEEHLTTHM RASGHCQVLE PKHHHMQQGL
201: YDHYNFDGTM HLPQLFSQES AVAPPTNSSL ASSMNAMDIL QCSQNLLRLT TTTGCGLNLM QQQQQQGERF SGDWSFLDKL LASHHGMDQS KCNPPTHHQG
301: ASVGTSAQKF PFHYLGCDTT HDIMKFSK

Best Arabidopsis Sequence Match ( AT1G79580.3 )
(BLAST)

001: MEIGSSSTVA GGGQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPIDLDVIR EVDLNKLEPW ELKEKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDSE NEIQEDGWVV CRVFKKKNHF RGFHQEQEQD HHHHHQYIST NNDHDHHHHI
201: DSNSNNHSPL ILHPLDHHHH HHHIGRQIHM PLHEFANTLS HGSMHLPQLF SPDSAAAAAA AAASAQPFVS PINTTDIECS QNLLRLTSNN NYGGDWSFLD
301: KLLTTGNMNQ QQQQQVQNHQ AKCFGDLSNN DNNDQADHLG NNNGGSSSSP VNQRFPFHYL GNDANLLKFP K

Arabidopsis Description

SMBProtein SOMBRERO [Source:UniProtKB/Swiss-Prot;Acc:Q9MA17]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.