Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G329200.1 | Wheat | nucleus | 92.97 | 93.48 |
| TraesCS7A01G349500.1 | Wheat | nucleus | 92.7 | 93.21 |
| TraesCS7B01G233300.1 | Wheat | nucleus | 93.51 | 93.01 |
| KXG20105 | Sorghum | cytosol, nucleus, plastid | 75.95 | 79.15 |
| Zm00001d046126_P001 | Maize | cytosol, nucleus, plastid | 74.32 | 77.03 |
| Zm00001d037029_P001 | Maize | nucleus | 73.78 | 74.59 |
| Os06t0530400-01 | Rice | cytosol, nucleus, peroxisome | 40.27 | 73.76 |
| CDY70728 | Canola | nucleus | 35.41 | 73.18 |
| HORVU7Hr1G012740.1 | Barley | cytosol, nucleus, plastid | 11.89 | 69.84 |
| GSMUA_Achr2P20020_001 | Banana | cytosol, nucleus, plastid | 51.08 | 66.55 |
| GSMUA_Achr10P... | Banana | nucleus | 53.24 | 63.55 |
| VIT_19s0085g01210.t01 | Wine grape | nucleus | 53.51 | 63.46 |
| GSMUA_Achr10P... | Banana | nucleus | 48.38 | 62.15 |
| KRH43624 | Soybean | cytosol, nucleus, peroxisome | 52.97 | 59.76 |
| PGSC0003DMT400025026 | Potato | nucleus | 52.16 | 59.57 |
| KRH13825 | Soybean | cytosol, nucleus, peroxisome | 51.62 | 58.59 |
| Solyc12g017400.1.1 | Tomato | nucleus | 49.19 | 57.05 |
| GSMUA_Achr3P03500_001 | Banana | nucleus | 30.27 | 51.61 |
| CDY71976 | Canola | nucleus | 47.03 | 49.86 |
| Bra008423.1-P | Field mustard | nucleus | 46.76 | 49.57 |
| CDY22285 | Canola | nucleus | 46.49 | 49.57 |
| Bra035127.1-P | Field mustard | nucleus | 47.3 | 48.75 |
| CDY70056 | Canola | nucleus | 47.03 | 48.74 |
| CDX87372 | Canola | nucleus | 47.3 | 48.61 |
| CDX88550 | Canola | nucleus | 47.57 | 48.48 |
| Bra003602.1-P | Field mustard | nucleus | 46.76 | 48.46 |
| OQU76499 | Sorghum | nucleus | 37.3 | 48.25 |
| AT1G79580.4 | Thale cress | nucleus | 47.84 | 47.71 |
| HORVU7Hr1G012730.2 | Barley | cytosol, nucleus | 31.08 | 45.1 |
| HORVU2Hr1G092030.2 | Barley | cytosol, nucleus, peroxisome | 37.03 | 40.41 |
| HORVU6Hr1G060800.3 | Barley | nucleus | 37.3 | 38.76 |
| HORVU7Hr1G000140.6 | Barley | nucleus | 35.95 | 38.11 |
| HORVU2Hr1G126080.3 | Barley | nucleus | 32.43 | 37.5 |
| HORVU4Hr1G083050.3 | Barley | cytosol, mitochondrion, nucleus | 36.76 | 36.96 |
| HORVU7Hr1G075550.1 | Barley | cytosol, nucleus, plastid | 39.73 | 36.93 |
| HORVU2Hr1G126040.14 | Barley | nucleus | 30.54 | 35.42 |
| HORVU7Hr1G012780.1 | Barley | nucleus | 40.0 | 33.04 |
| HORVU7Hr1G012760.6 | Barley | plastid | 39.19 | 31.66 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:GO:0003002 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009834 | GO:GO:0009987 | GO:GO:0010455 | GO:GO:0030154 | GO:GO:0048829 | EnsemblPlantsGene:HORVU7Hr1G079500 |
| EnsemblPlants:HORVU7Hr1G079500.1 | InterPro:IPR003441 | InterPro:IPR036093 | UniProt:M0V261 | InterPro:NAC-dom | InterPro:NAC_dom_sf |
| PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31989 | PANTHER:PTHR31989:SF16 | InterPro:SMB | SUPFAM:SSF101941 |
| UniParc:UPI00029622D5 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr7H:+:469365393..469367735
Molecular Weight (calculated)
41369.1 Da
IEP (calculated)
6.962
GRAVY (calculated)
-0.548
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MHPSGGVLSV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREIDLNKL EPWDLKDRCR IGTGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD
101: KAIFLGSGAR RIGMRKTLVF YVGRAPHGKK TDWIMHEYRL DEDNVEVQED GWVVCRVFTK KSYTRGMNPA EMAGYDDDEL LHPFPVPASA TGAMQMTTDQ
201: KHMMHNHGPG HLMQQHGQQH YDFPSFDVSM QLPQLMSAEH EQQTLSSFLP GAGAPDAVAM SSLDVQCSQN LMKLTSSGTN GMLHHSGGGG DPRFPGTDWS
301: ILDKLLASHQ NLDQLFQGKV AAAAAASMAP YQQQQLMEQL GGSSSSTSSM QRMPLQYLGC EAADLLRFSK
101: KAIFLGSGAR RIGMRKTLVF YVGRAPHGKK TDWIMHEYRL DEDNVEVQED GWVVCRVFTK KSYTRGMNPA EMAGYDDDEL LHPFPVPASA TGAMQMTTDQ
201: KHMMHNHGPG HLMQQHGQQH YDFPSFDVSM QLPQLMSAEH EQQTLSSFLP GAGAPDAVAM SSLDVQCSQN LMKLTSSGTN GMLHHSGGGG DPRFPGTDWS
301: ILDKLLASHQ NLDQLFQGKV AAAAAASMAP YQQQQLMEQL GGSSSSTSSM QRMPLQYLGC EAADLLRFSK
001: MEIGSSSTVA GGGQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPIDLDVIR EVDLNKLEPW ELKEKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDSE NEIQEDGWVV CRVFKKKNHF RGFHQEQEQD HHHHHQYIST NNDHDHHHHI
201: DSNSNNHSPL ILHPLDHHHH HHHIGRQIHM PLHEFANTLS HGSMHLPQLF SPDSAAAAAA AAASAQPFVS PINTTDIECS QNLLRLTSNN NYGGDWSFLD
301: KLLTTGNMNQ QQQQQVQNHQ AKCFGDLSNN DNNDQADHLG NNNGGSSSSP VNQRFPFHYL GNDANLLKFP K
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDSE NEIQEDGWVV CRVFKKKNHF RGFHQEQEQD HHHHHQYIST NNDHDHHHHI
201: DSNSNNHSPL ILHPLDHHHH HHHIGRQIHM PLHEFANTLS HGSMHLPQLF SPDSAAAAAA AAASAQPFVS PINTTDIECS QNLLRLTSNN NYGGDWSFLD
301: KLLTTGNMNQ QQQQQVQNHQ AKCFGDLSNN DNNDQADHLG NNNGGSSSSP VNQRFPFHYL GNDANLLKFP K
Arabidopsis Description
SMBProtein SOMBRERO [Source:UniProtKB/Swiss-Prot;Acc:Q9MA17]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.