Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70728 | Canola | nucleus | 47.17 | 97.77 |
| CDY70056 | Canola | nucleus | 88.41 | 91.88 |
| Bra003602.1-P | Field mustard | nucleus | 88.14 | 91.6 |
| CDY22285 | Canola | nucleus | 84.37 | 90.2 |
| CDY71976 | Canola | nucleus | 84.64 | 89.97 |
| Bra008423.1-P | Field mustard | nucleus | 84.37 | 89.68 |
| VIT_19s0085g01210.t01 | Wine grape | nucleus | 55.53 | 66.03 |
| GSMUA_Achr2P20020_001 | Banana | cytosol, nucleus, plastid | 49.6 | 64.79 |
| Os06t0530400-01 | Rice | cytosol, nucleus, peroxisome | 33.42 | 61.39 |
| KRH13825 | Soybean | cytosol, nucleus, peroxisome | 53.91 | 61.35 |
| GSMUA_Achr10P... | Banana | nucleus | 50.67 | 60.65 |
| PGSC0003DMT400025026 | Potato | nucleus | 52.83 | 60.49 |
| KRH43624 | Soybean | cytosol, nucleus, peroxisome | 53.37 | 60.37 |
| Solyc12g017400.1.1 | Tomato | nucleus | 50.13 | 58.31 |
| GSMUA_Achr10P... | Banana | nucleus | 42.32 | 54.51 |
| KXG20105 | Sorghum | cytosol, nucleus, plastid | 48.52 | 50.7 |
| Zm00001d046126_P001 | Maize | cytosol, nucleus, plastid | 48.79 | 50.7 |
| GSMUA_Achr3P03500_001 | Banana | nucleus | 28.84 | 49.31 |
| Zm00001d037029_P001 | Maize | nucleus | 48.25 | 48.91 |
| TraesCS7D01G329200.1 | Wheat | nucleus | 47.98 | 48.37 |
| TraesCS7A01G349500.1 | Wheat | nucleus | 47.71 | 48.1 |
| Os02t0252200-01 | Rice | nucleus | 46.36 | 47.91 |
| HORVU7Hr1G079500.1 | Barley | nucleus | 47.71 | 47.84 |
| TraesCS7B01G233300.1 | Wheat | nucleus | 47.44 | 47.31 |
| EES04857 | Sorghum | nucleus | 43.4 | 46.8 |
| Zm00001d016119_P001 | Maize | cytosol, nucleus, plastid | 42.86 | 45.56 |
| AT1G33280.1 | Thale cress | nucleus | 33.96 | 41.31 |
| AT1G32770.1 | Thale cress | nucleus | 39.35 | 40.78 |
| AT5G66300.1 | Thale cress | nucleus | 31.81 | 40.41 |
| AT2G46770.1 | Thale cress | nucleus | 38.54 | 39.18 |
| AT4G10350.1 | Thale cress | nucleus | 35.31 | 38.42 |
| AT3G61910.1 | Thale cress | nucleus | 34.23 | 38.02 |
| OQU76499 | Sorghum | nucleus | 29.11 | 37.76 |
| AT1G71930.2 | Thale cress | nucleus | 32.34 | 37.04 |
| AT2G18060.1 | Thale cress | nucleus | 33.15 | 33.7 |
| AT4G36160.2 | Thale cress | nucleus | 34.23 | 33.33 |
| AT5G62380.1 | Thale cress | nucleus | 30.19 | 32.18 |
| AT1G12260.1 | Thale cress | nucleus | 33.69 | 31.65 |
| AT1G62700.1 | Thale cress | nucleus | 33.15 | 31.22 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | EntrezGene:844296 | UniProt:A0A178WJ15 | ProteinID:AAF68129.1 | ProteinID:AEE36266.1 |
| ProteinID:AEE36267.1 | ProteinID:AEE36268.1 | ProteinID:ANM61091.1 | ProteinID:ANM61092.1 | ArrayExpress:AT1G79580 | EnsemblPlantsGene:AT1G79580 |
| RefSeq:AT1G79580 | TAIR:AT1G79580 | RefSeq:AT1G79580-TAIR-G | EnsemblPlants:AT1G79580.4 | Unigene:At.50052 | EMBL:BX816756 |
| GO:GO:0003002 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009834 |
| GO:GO:0009987 | GO:GO:0010455 | GO:GO:0030154 | GO:GO:0048829 | InterPro:IPR003441 | InterPro:IPR036093 |
| InterPro:NAC-dom | InterPro:NAC_dom_sf | RefSeq:NP_001319416.1 | RefSeq:NP_001323331.1 | RefSeq:NP_178076.1 | RefSeq:NP_974178.1 |
| RefSeq:NP_974179.1 | ProteinID:OAP18369.1 | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31989 | PANTHER:PTHR31989:SF16 |
| UniProt:Q9MA17 | InterPro:SMB | Symbol:SMB | SUPFAM:SSF101941 | UniParc:UPI00000A9740 | SEG:seg |
Description
SMBProtein SOMBRERO [Source:UniProtKB/Swiss-Prot;Acc:Q9MA17]
Coordinates
chr1:-:29940803..29943498
Molecular Weight (calculated)
42384.1 Da
IEP (calculated)
7.224
GRAVY (calculated)
-0.912
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIGSSSTVA GGGQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPIDLDVIR EVDLNKLEPW ELKEKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDSE NEIQEDGWVV CRVFKKKNHF RGFHQEQEQD HHHHHQYIST NNDHDHHHHI
201: DSNSNNHSPL ILHPLDHHHH HHHIGRQIHM PLHEFANTLS HGSMHLPQLF SPDSAAAAAA AAASAQPFVS PINTTDIECS QNLLRLTSNN NYGGDWSFLD
301: KLLTTGNMNQ QQQQQVQNHQ AKCFGDLSNN DNNDQADHLG NNNGGSSSSP VNQRFPFHYL GNDANLLKFP K
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDSE NEIQEDGWVV CRVFKKKNHF RGFHQEQEQD HHHHHQYIST NNDHDHHHHI
201: DSNSNNHSPL ILHPLDHHHH HHHIGRQIHM PLHEFANTLS HGSMHLPQLF SPDSAAAAAA AAASAQPFVS PINTTDIECS QNLLRLTSNN NYGGDWSFLD
301: KLLTTGNMNQ QQQQQVQNHQ AKCFGDLSNN DNNDQADHLG NNNGGSSSSP VNQRFPFHYL GNDANLLKFP K
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.