Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70728 | Canola | nucleus | 45.83 | 79.89 |
| KRH13825 | Soybean | cytosol, nucleus, peroxisome | 77.88 | 74.54 |
| KRH43624 | Soybean | cytosol, nucleus, peroxisome | 78.21 | 74.39 |
| GSMUA_Achr2P20020_001 | Banana | cytosol, nucleus, plastid | 65.06 | 71.48 |
| Os06t0530400-01 | Rice | cytosol, nucleus, peroxisome | 44.55 | 68.81 |
| GSMUA_Achr10P... | Banana | nucleus | 67.31 | 67.74 |
| PGSC0003DMT400025026 | Potato | nucleus | 68.59 | 66.05 |
| Solyc12g017400.1.1 | Tomato | nucleus | 66.03 | 64.58 |
| GSMUA_Achr10P... | Banana | nucleus | 57.05 | 61.81 |
| CDY71976 | Canola | nucleus | 66.03 | 59.03 |
| Bra008423.1-P | Field mustard | nucleus | 65.71 | 58.74 |
| CDY22285 | Canola | nucleus | 65.06 | 58.5 |
| CDX87372 | Canola | nucleus | 66.67 | 57.78 |
| Bra035127.1-P | Field mustard | nucleus | 66.35 | 57.66 |
| CDX88550 | Canola | nucleus | 66.35 | 57.02 |
| CDY70056 | Canola | nucleus | 65.06 | 56.86 |
| Bra003602.1-P | Field mustard | nucleus | 64.74 | 56.58 |
| AT1G79580.4 | Thale cress | nucleus | 66.03 | 55.53 |
| KXG20105 | Sorghum | cytosol, nucleus, plastid | 61.54 | 54.08 |
| GSMUA_Achr3P03500_001 | Banana | nucleus | 37.5 | 53.92 |
| TraesCS7D01G329200.1 | Wheat | nucleus | 63.46 | 53.8 |
| Os02t0252200-01 | Rice | nucleus | 61.86 | 53.76 |
| TraesCS7A01G349500.1 | Wheat | nucleus | 63.14 | 53.53 |
| HORVU7Hr1G079500.1 | Barley | nucleus | 63.46 | 53.51 |
| TraesCS7B01G233300.1 | Wheat | nucleus | 63.46 | 53.23 |
| Zm00001d046126_P001 | Maize | cytosol, nucleus, plastid | 60.58 | 52.94 |
| EES04857 | Sorghum | nucleus | 57.69 | 52.33 |
| Zm00001d037029_P001 | Maize | nucleus | 61.22 | 52.19 |
| Zm00001d016119_P001 | Maize | cytosol, nucleus, plastid | 56.73 | 50.72 |
| VIT_15s0048g02660.t01 | Wine grape | nucleus | 51.92 | 41.97 |
| VIT_18s0089g01120.t01 | Wine grape | nucleus | 47.44 | 41.23 |
| VIT_18s0072g01060.t01 | Wine grape | nucleus | 40.71 | 40.58 |
| OQU76499 | Sorghum | nucleus | 37.18 | 40.56 |
| VIT_02s0154g00020.t01 | Wine grape | nucleus | 46.15 | 40.34 |
| VIT_04s0023g03110.t01 | Wine grape | nucleus | 43.27 | 40.3 |
| VIT_16s0022g00690.t01 | Wine grape | cytosol, nucleus, peroxisome | 44.23 | 38.44 |
| VIT_02s0025g02710.t01 | Wine grape | nucleus | 49.36 | 38.02 |
Protein Annotations
| EntrezGene:100255276 | wikigene:100255276 | MapMan:15.5.17 | Gene3D:3.30.310.150 | EMBL:AM429849 | ProteinID:CAN64706 |
| ProteinID:CAN64706.1 | ProteinID:CCB48960 | ProteinID:CCB48960.1 | UniProt:F6H9R7 | EMBL:FN595503 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003441 | InterPro:IPR036093 | EntrezGene:LOC100255276 | wikigene:LOC100255276 |
| InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31989 | PANTHER:PTHR31989:SF112 |
| SUPFAM:SSF101941 | UniParc:UPI00015CD12B | ArrayExpress:VIT_19s0085g01210 | EnsemblPlantsGene:VIT_19s0085g01210 | EnsemblPlants:VIT_19s0085g01210.t01 | RefSeq:XP_002269543 |
| RefSeq:XP_002269543.1 | RefSeq:XP_019072686.1 | : | : | : | : |
Description
No Description!
Coordinates
chr19:-:23954167..23955930
Molecular Weight (calculated)
35694.2 Da
IEP (calculated)
7.643
GRAVY (calculated)
-0.633
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MMPASGQLSV PPGFRFHPTD EELLHYYLRK KVSYEAIDLD VIREVDLNKL EPWDLKDKCR IGSGSQNEWY FFSHKDKKYP TGTRTNRATM AGFWKATGRD
101: KAIHLSNSKR IGLRKTLVFY TGRAPHGQKT DWIMHEYRLD DDNADVQEDG WVVCRVFKKK NHNRGFQSEA AQEEYLTHMR ASGSALLEPK QNVQALYDFN
201: FDGSMHLPQL LSPESAVPPS FISPLSLNTM DIECSQNLLR LTSTGCGLIQ QERMNGDWSF LDKLLASHQS LDQHSQTKCH PSSQVVDHVG TSAQKFPFQY
301: LGCETDILKF SK
101: KAIHLSNSKR IGLRKTLVFY TGRAPHGQKT DWIMHEYRLD DDNADVQEDG WVVCRVFKKK NHNRGFQSEA AQEEYLTHMR ASGSALLEPK QNVQALYDFN
201: FDGSMHLPQL LSPESAVPPS FISPLSLNTM DIECSQNLLR LTSTGCGLIQ QERMNGDWSF LDKLLASHQS LDQHSQTKCH PSSQVVDHVG TSAQKFPFQY
301: LGCETDILKF SK
001: MEIGSSSTVA GGGQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPIDLDVIR EVDLNKLEPW ELKEKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDSE NEIQEDGWVV CRVFKKKNHF RGFHQEQEQD HHHHHQYIST NNDHDHHHHI
201: DSNSNNHSPL ILHPLDHHHH HHHIGRQIHM PLHEFANTLS HGSMHLPQLF SPDSAAAAAA AAASAQPFVS PINTTDIECS QNLLRLTSNN NYGGDWSFLD
301: KLLTTGNMNQ QQQQQVQNHQ AKCFGDLSNN DNNDQADHLG NNNGGSSSSP VNQRFPFHYL GNDANLLKFP K
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDSE NEIQEDGWVV CRVFKKKNHF RGFHQEQEQD HHHHHQYIST NNDHDHHHHI
201: DSNSNNHSPL ILHPLDHHHH HHHIGRQIHM PLHEFANTLS HGSMHLPQLF SPDSAAAAAA AAASAQPFVS PINTTDIECS QNLLRLTSNN NYGGDWSFLD
301: KLLTTGNMNQ QQQQQVQNHQ AKCFGDLSNN DNNDQADHLG NNNGGSSSSP VNQRFPFHYL GNDANLLKFP K
Arabidopsis Description
SMBProtein SOMBRERO [Source:UniProtKB/Swiss-Prot;Acc:Q9MA17]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.