Factsheet for AT2G18060.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039915.1-P	Field mustard	nucleus	63.84	86.3
CDY38177	Canola	nucleus	80.27	81.16
AT4G36160.2	Thale cress	nucleus	73.97	70.87
KRH76680	Soybean	nucleus	63.84	67.73
PGSC0003DMT400009136	Potato	nucleus	61.64	64.84
Solyc02g084350.2.1	Tomato	nucleus	61.92	64.76
AT5G66300.1	Thale cress	nucleus	49.04	61.3
KRH28776	Soybean	endoplasmic reticulum, golgi, mitochondrion	63.56	61.05
GSMUA_Achr11P...	Banana	nucleus	55.62	60.78
GSMUA_Achr8P12100_001	Banana	nucleus	54.79	60.24
AT1G71930.2	Thale cress	nucleus	41.37	46.6
AT1G62700.1	Thale cress	nucleus	47.95	44.42
AT1G12260.1	Thale cress	nucleus	46.3	42.78
AT5G62380.1	Thale cress	nucleus	38.63	40.52
AT3G61910.1	Thale cress	nucleus	36.16	39.52
AT1G32770.1	Thale cress	nucleus	37.53	38.27
AT2G46770.1	Thale cress	nucleus	37.53	37.53
AT1G33280.1	Thale cress	nucleus	31.23	37.38
AT4G10350.1	Thale cress	nucleus	32.05	34.31
AT1G79580.4	Thale cress	nucleus	33.7	33.15

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	EntrezGene:816318	UniProt:A0A178VM15	ProteinID:AAD20120.1	ProteinID:AEC06722.1
ProteinID:ANM61740.1	ArrayExpress:AT2G18060	EnsemblPlantsGene:AT2G18060	RefSeq:AT2G18060	TAIR:AT2G18060	RefSeq:AT2G18060-TAIR-G
EnsemblPlants:AT2G18060.1	TAIR:AT2G18060.1	Unigene:At.52795	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009987	GO:GO:0010200
GO:GO:0016043	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	GO:GO:0048759	GO:GO:0071555
GO:GO:1901348	GO:GO:1990110	InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf
RefSeq:NP_001318244.1	RefSeq:NP_179397.1	ProteinID:OAP07379.1	PFAM:PF02365	PO:PO:0003011	PO:PO:0007611
PO:PO:0009005	PO:PO:0009046	PO:PO:0020100	PO:PO:0025275	PFscan:PS51005	PANTHER:PTHR31989
PANTHER:PTHR31989:SF107	UniProt:Q9SL41	SUPFAM:SSF101941	UniParc:UPI00000A3570	Symbol:VND1	SEG:seg

Description

NAC037VND1 [Source:UniProtKB/TrEMBL;Acc:A0A178VM15]

Coordinates

chr2:-:7847967..7851553

Molecular Weight (calculated)

42478.9 Da

IEP (calculated)

5.232

GRAVY (calculated)

-0.820

Length

365 amino acids

Sequence
(BLAST)

001: MEPMESCSVP PGFRFHPTDE ELVGYYLRKK IASQKIDLDV IRDIDLYRIE PWDLQEQCRI GYEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK
101: AVYDKTKLIG MRKTLVFYKG RAPNGKKSDW IMHEYRLESD ENAPPQEEGW VVCRAFKKRA TGQAKNTETW SSSYFYDEVA PNGVNSVMDP IDYISKQQHN
201: IFGKGLMCKQ ELEGMVDGIN YIQSNQFIQL PQLQSPSLPL MKRPSSSMSI TSMDNNYNYK LPLADEESFE SFIRGEDRRK KKKQVMMTGN WRELDKFVAS
301: QLMSQEDNGT SSFAGHHIVN EDKNNNDVEM DSSMFLSERE EENRFVSEFL STNSDYDIGI CVFDN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.