CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi

Predictor Summary:

extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, mitochondrion
Any Predictor:	mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11775
KRH25015
KRH29910
KRH36781
KRH43001
KRH59117

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18060.1	KRH11775	AT1G30490.1	21245844
AT2G18060.1	KRH36781	AT1G30490.1	21245844
AT2G18060.1	KRH43001	AT1G30490.1	21245844
AT2G18060.1	KRH59117	AT1G30490.1	21245844
AT2G18060.1	KRH11775	AT2G34710.1	21245844
AT2G18060.1	KRH36781	AT2G34710.1	21245844
AT2G18060.1	KRH43001	AT2G34710.1	21245844
AT2G18060.1	KRH59117	AT2G34710.1	21245844
AT2G18060.1	KRH25015	AT5G60690.1	21245844
AT2G18060.1	KRH29910	AT5G60690.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76680	Soybean	nucleus	86.05	95.06
KRH08100	Soybean	nucleus	69.47	72.93
Bra039915.1-P	Field mustard	nucleus	51.58	72.59
KRH69806	Soybean	nucleus	68.68	72.1
Solyc02g084350.2.1	Tomato	nucleus	65.26	71.06
PGSC0003DMT400009136	Potato	nucleus	64.74	70.89
AT2G18060.1	Thale cress	nucleus	61.05	63.56
GSMUA_Achr8P12100_001	Banana	nucleus	55.26	63.25
CDY38177	Canola	nucleus	59.74	62.88
GSMUA_Achr11P...	Banana	nucleus	53.68	61.08
KRH62610	Soybean	nucleus	45.79	51.03
KRH23801	Soybean	nucleus	45.79	50.14
KRH39986	Soybean	nucleus	46.58	50.0
KRH28034	Soybean	nucleus	46.05	48.61
KRH57345	Soybean	nucleus	46.05	48.08
KRH56355	Soybean	nucleus	45.79	47.93
KRG97235	Soybean	nucleus	33.16	47.55
KRH04074	Soybean	nucleus	45.79	47.54
KRG97237	Soybean	nucleus	32.89	47.17
KRG91808	Soybean	nucleus	40.26	44.87
KRH34977	Soybean	nucleus	40.53	44.51
KRH13825	Soybean	cytosol, nucleus, peroxisome	35.79	41.72
KRH43624	Soybean	cytosol, nucleus, peroxisome	35.79	41.46
KRH23778	Soybean	nucleus	34.74	37.08
KRH40024	Soybean	nucleus	35.0	37.05
KRH47818	Soybean	nucleus	38.42	36.5
KRH06383	Soybean	nucleus	38.42	32.96

Protein Annotations

EntrezGene:100802758	MapMan:15.5.17	Gene3D:3.30.310.150	UniProt:A0A0R0HMJ3	EMBL:ACUP02006765	EnsemblPlantsGene:GLYMA_11G075400
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093	EnsemblPlants:KRH28776
ProteinID:KRH28776	ProteinID:KRH28776.1	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31989	PANTHER:PTHR31989:SF107	SUPFAM:SSF101941	UniParc:UPI0006ED8A59	SEG:seg	:

Description

hypothetical protein

Coordinates

chr11:+:5650381..5653943

Molecular Weight (calculated)

43862.7 Da

IEP (calculated)

5.730

GRAVY (calculated)

-0.628

Length

380 amino acids

Sequence
(BLAST)

001: MGRKSLFLKS WGFVYNTRLY LFPIQFIPVI AIMESMESCV PPGFRFHPTD EELVGYYLRK KVASQKIDLD VIREIDLYRI EPWDLQERCR IGYEEQNEWY
101: FFSHKDKKYP TGTRTNRATM AGFWKATGRD KAVYERAKLI GMRKTLVFYK GRAPNGQKSD WIMHEYRLES DENGPPQEEG WVVCRAFKKK TTGQTKTINI
201: EGWESSYFYD EASGATSTLV DPIELISRQS QSFLAQNFMC KQELEADNLT CMHQDPFVQL PQLESPSLPL VKKPSTVSLV SDNNNEGEDN QNRLLFNNNN
301: TKKVTTDWRA LDKFVASQLS QEVNTHETNV GVLSSSFEPH DDNHDMALLL LQSSRDEGNR LSPFLNTSSD CDNGICVFEK

Best Arabidopsis Sequence Match ( AT2G18060.1 )
(BLAST)

001: MEPMESCSVP PGFRFHPTDE ELVGYYLRKK IASQKIDLDV IRDIDLYRIE PWDLQEQCRI GYEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK
101: AVYDKTKLIG MRKTLVFYKG RAPNGKKSDW IMHEYRLESD ENAPPQEEGW VVCRAFKKRA TGQAKNTETW SSSYFYDEVA PNGVNSVMDP IDYISKQQHN
201: IFGKGLMCKQ ELEGMVDGIN YIQSNQFIQL PQLQSPSLPL MKRPSSSMSI TSMDNNYNYK LPLADEESFE SFIRGEDRRK KKKQVMMTGN WRELDKFVAS
301: QLMSQEDNGT SSFAGHHIVN EDKNNNDVEM DSSMFLSERE EENRFVSEFL STNSDYDIGI CVFDN

Arabidopsis Description

NAC037VND1 [Source:UniProtKB/TrEMBL;Acc:A0A178VM15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.