CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025483_P001	Maize	nucleus	88.66	90.77
TraesCS2A01G311500.1	Wheat	nucleus	83.43	85.42
TraesCS2D01G309800.1	Wheat	nucleus	83.14	85.12
TraesCS2B01G328300.1	Wheat	nucleus	83.14	85.12
GSMUA_Achr6P28890_001	Banana	nucleus	59.3	63.95
GSMUA_Achr2P05640_001	Banana	cytosol, nucleus, plastid	56.1	60.31
Solyc06g063430.1.1	Tomato	nucleus	51.16	55.35
VIT_18s0089g01120.t01	Wine grape	nucleus	54.65	52.37
AT1G33280.1	Thale cress	nucleus	46.22	52.13
CDX90756	Canola	nucleus	50.0	51.81
CDY05099	Canola	nucleus	50.0	51.65
Bra037914.1-P	Field mustard	nucleus	51.16	51.46
AT4G10350.1	Thale cress	nucleus	50.29	50.73
KRH23778	Soybean	nucleus	52.33	50.56
Bra000709.1-P	Field mustard	nucleus	50.0	50.44
KRH40024	Soybean	nucleus	52.33	50.14
KXG20105	Sorghum	cytosol, nucleus, plastid	39.83	38.59
EES04857	Sorghum	nucleus	38.08	38.08
KXG31125	Sorghum	nucleus	38.37	38.04
OQU82026	Sorghum	nucleus	37.5	37.94
EER94595	Sorghum	cytosol, mitochondrion, nucleus	34.59	35.74
OQU75680	Sorghum	nucleus	34.3	34.81
OQU93335	Sorghum	cytosol, mitochondrion, nucleus	36.92	34.23
EES13158	Sorghum	nucleus	32.85	33.93
EER87784	Sorghum	cytosol, nucleus, plastid	42.15	33.88
EES14359	Sorghum	nucleus	32.27	33.13
KXG24274	Sorghum	nucleus	39.24	32.22
OQU76499	Sorghum	nucleus	26.45	31.82

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	EntrezGene:8075854	InterPro:BRN1/BRN2	UniProt:C5Y965	EnsemblPlants:EES12234
ProteinID:EES12234	ProteinID:EES12234.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441
InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989
PANTHER:PTHR31989:SF18	EnsemblPlantsGene:SORBI_3006G092100	SUPFAM:SSF101941	UniParc:UPI0001A87237	RefSeq:XP_002447906.1	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:46223781..46225572

Molecular Weight (calculated)

37496.6 Da

IEP (calculated)

7.164

GRAVY (calculated)

-0.667

Length

344 amino acids

Sequence
(BLAST)

001: MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KVGFEKFDLE VIREVDLNKI EPWELQERCR IGSAPQNEWY FFSHKDRKYP TGSRTNRATT AGFWKATGRD
101: KCIRTSYRKI GMRKTLVFYR GRAPHGQKTD WIMHEYRLED ADDAQGGTSE DGWVVCRVFK KKCFFKIGGG EGSTSQGADA GGHLAVSPPP LGGHHDHARA
201: AMAYMHPHPY YHHASSYYSQ MQAPAPPHAA AYSHHVQVQD LLTNHRPTVD DGAGTAGYDF SGLPVEHHPG GGLDVGSSDG VATDGGGGQL AGEGRDQATG
301: AAAEQWQAID GFSNGGSAAV QQMTGAMSSG AQRGGEMDLW GYGR

Best Arabidopsis Sequence Match ( AT4G10350.1 )
(BLAST)

001: MGSSSNGGVP PGFRFHPTDE ELLHYYLKKK ISYQKFEMEV IREVDLNKLE PWDLQERCKI GSTPQNEWYF FSHKDRKYPT GSRTNRATHA GFWKATGRDK
101: CIRNSYKKIG MRKTLVFYKG RAPHGQKTDW IMHEYRLEDA DDPQANPSED GWVVCRVFMK KNLFKVVNEG SSSINSLDQH NHDASNNNHA LQARSFMHRD
201: SPYQLVRNHG AMTFELNKPD LALHQYPPIF HKPPSLGFDY SSGLARDSES AASEGLQYQQ ACEPGLDVGT CETVASHNHQ QGLGEWAMMD RLVTCHMGNE
301: DSSRGITYED GNNNSSSVVQ PVPATNQLTL RSEMDFWGYS K

Arabidopsis Description

BRN2Protein BEARSKIN2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SV87]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.