Factsheet for Solyc02g069830.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g078620.1.1
Solyc02g084350.2.1
Solyc05g013540.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30490.1	Solyc05g013540.1.1	AT1G24590.1	17376809
AT1G30490.1	Solyc02g078620.1.1	AT3G45610.1	21245844
AT2G34710.1	Solyc02g084350.2.1	AT2G18060.1	21245844
AT2G34710.1	Solyc02g078620.1.1	AT3G45610.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054421	Potato	cytosol, nucleus, plastid	96.56	97.37
Solyc02g024070.2.1	Tomato	cytosol, nucleus, plastid	86.34	85.43
VIT_10s0003g04670.t01	Wine grape	cytosol, nucleus, plastid	81.95	81.66
KRH11775	Soybean	cytosol, nucleus, plastid	80.52	80.14
GSMUA_Achr2P13060_001	Banana	cytosol	7.96	79.76
KRH36781	Soybean	cytosol, nucleus, plastid	80.4	79.46
KRH43001	Soybean	cytosol	76.6	75.97
KRH59117	Soybean	cytosol	75.53	74.56
EER91178	Sorghum	nucleus	75.3	74.24
Zm00001d033246_P004	Maize	cytosol	74.94	73.72
Zm00001d013699_P001	Maize	cytosol	74.94	73.72
Bra021926.1-P	Field mustard	cytosol	73.75	73.67
Os03t0640800-01	Rice	plastid	75.06	73.57
AT1G30490.1	Thale cress	nucleus	73.4	73.48
AT2G34710.1	Thale cress	cytosol	74.35	73.47
GSMUA_Achr4P31660_001	Banana	cytosol	74.82	73.34
Bra005398.1-P	Field mustard	cytosol	73.87	73.26
Bra032394.1-P	Field mustard	cytosol, nucleus, plastid	72.92	73.1
TraesCS5A01G375800.1	Wheat	cytosol, nucleus, plastid	74.82	73.09
TraesCS5B01G378000.1	Wheat	cytosol, nucleus, plastid	74.82	73.09
TraesCS5D01G385300.1	Wheat	cytosol, nucleus, plastid	74.7	72.97
GSMUA_Achr2P13050_001	Banana	cytosol	66.63	71.83
GSMUA_Achr5P02420_001	Banana	cytosol	74.47	71.74
GSMUA_Achr7P01060_001	Banana	cytosol	73.16	71.71
TraesCS5A01G043400.1	Wheat	cytosol, nucleus, plastid	71.02	70.69
Os12t0612700-01	Rice	nucleus	71.73	70.64
GSMUA_Achr8P02960_001	Banana	cytosol	70.19	70.44
GSMUA_Achr4P28360_001	Banana	cytosol	75.18	70.33
TraesCS5D01G052300.1	Wheat	mitochondrion, plastid	71.02	67.72
HORVU5Hr1G010650.1	Barley	cytosol	69.0	67.72
EES17386	Sorghum	mitochondrion	68.53	67.33
TraesCS5B01G047200.1	Wheat	extracellular, mitochondrion, nucleus, plastid	70.19	67.24
HORVU0Hr1G010250.3	Barley	cytosol	59.03	66.71
Zm00001d041489_P009	Maize	cytosol, nucleus, plastid	67.58	65.78
Solyc11g069470.1.1	Tomato	cytosol, nucleus, plastid	65.68	65.76
Solyc08g066500.2.1	Tomato	cytosol	64.49	65.66
Solyc03g120910.2.1	Tomato	cytosol	63.54	64.0
Zm00001d031061_P007	Maize	mitochondrion	66.63	62.75
HORVU5Hr1G093150.2	Barley	cytosol, plastid	74.58	62.61
Solyc12g044410.1.1	Tomato	nucleus	61.88	62.25
Solyc01g057960.1.1	Tomato	plastid	8.67	52.9
Zm00001d018824_P001	Maize	cytosol	8.31	51.09
CDX71242	Canola	peroxisome	4.63	46.43
AT5G32670.1	Thale cress	cytosol, plastid	9.98	43.75
CDY53980	Canola	cytosol, nucleus, peroxisome	7.24	39.35

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393
UniProt:K4B7W5	InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670	PFscan:PS50071
PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF494	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689
SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	EnsemblPlantsGene:Solyc02g069830.2	EnsemblPlants:Solyc02g069830.2.1	UniParc:UPI00027682AA
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:39656812..39664372

Molecular Weight (calculated)

92794.1 Da

IEP (calculated)

6.424

GRAVY (calculated)

-0.146

Length

842 amino acids

Sequence
(BLAST)

001: MHKDCNKEMD SSKYVRYTPE QVEALERVYA ECPKPTSLKR HQLIRECSIL SNIDPKQIKV WFQNRRCREK QRKEASHLQT VNRKLTAMNK LLMEENDRLQ
101: KHVSHLVYDN GFMRQQLHTV NSTTTDTCCE SVVVSGQQQQ QNPMPQHHPQ RDANSPAGLL AIAEETLTEF LGKATGTAVD WVQMIGMKPG PESIGIVAVS
201: RNCNGVAARA CGLVSLEPMK VAEILKDRPS WYRDCRCLDI LNVIPTGNGG TIELIYLQTY APTTLAPARD FWTLRYTTSL EDGSLVICER SLTSNTGGPV
301: GPPATSSVRA KMLPSGFLIR PCEGGGSIIH IVDHIDLDAC SVPEVLRPLY ESSKILAQKL TMAAFRYIRQ IAQETSGEIQ YAGGRQPAVL RAFSQRLCRG
401: FNNAVSGFID DGWTIMGSDG VDDVTIAVNS SPSKFLDAQY NTLSILPTFG GVLCARASML LQDVCPALLV RFLREHRSEW ADYGVDAYSS ASLKASPYAV
501: PCARPGVFPS SQVILPLAQT VEHEEFLEVV RLEGHAFSPE DIALSRDMYL LQLCSGVEEN ATGACAQLVF AHIDESFGDD APLLPSGFSV IPLEPKSDSP
601: SAARTLDLAS TLEARTGGTR PAGEVEGSSY NHRSVLTIAF QFAFENHYRE NVAAMARQYV RSIVGSVQRV AMAIAPSRLC SQLTPKSFPG SPEAVTLARW
701: ICRSYKNHTG GELLQMDSQA AGDAVLKQLW HHTDSIMCCS VKMNDSAFFS FANQAGLDML ETTLIALQDI MLDKILDEAG RKVLLSEFPK IMQQGFAYLP
801: AGLCVSSMGR PVSYEQAVAW KVLNDDNSNH CLAFMFTNWS FI

Best Arabidopsis Sequence Match ( AT2G34710.1 )
(BLAST)

001: MMMVHSMSRD MMNRESPDKG LDSGKYVRYT PEQVEALERV YTECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEAARL QTVNRKLNAM
101: NKLLMEENDR LQKQVSNLVY ENGHMKHQLH TASGTTTDNS CESVVVSGQQ HQQQNPNPQH QQRDANNPAG LLSIAEEALA EFLSKATGTA VDWVQMIGMK
201: PGPDSIGIVA ISRNCSGIAA RACGLVSLEP MKVAEILKDR PSWLRDCRSV DTLSVIPAGN GGTIELIYTQ MYAPTTLAAA RDFWTLRYST CLEDGSYVVC
301: ERSLTSATGG PTGPPSSNFV RAEMKPSGFL IRPCDGGGSI LHIVDHVDLD AWSVPEVMRP LYESSKILAQ KMTVAALRHV RQIAQETSGE VQYGGGRQPA
401: VLRTFSQRLC RGFNDAVNGF VDDGWSPMGS DGAEDVTVMI NLSPGKFGGS QYGNSFLPSF GSGVLCAKAS MLLQNVPPAV LVRFLREHRS EWADYGVDAY
501: AAASLRASPF AVPCARAGGF PSNQVILPLA QTVEHEESLE VVRLEGHAYS PEDMGLARDM YLLQLCSGVD ENVVGGCAQL VFAPIDESFA DDAPLLPSGF
601: RIIPLEQKST PNGASANRTL DLASALEGST RQAGEADPNG CNFRSVLTIA FQFTFDNHSR DSVASMARQY VRSIVGSIQR VALAIAPRPG SNISPISVPT
701: SPEALTLVRW ISRSYSLHTG ADLFGSDSQT SGDTLLHQLW NHSDAILCCS LKTNASPVFT FANQTGLDML ETTLVALQDI MLDKTLDEPG RKALCSEFPK
801: IMQQGYAHLP AGVCASSMGR MVSYEQATVW KVLEDDESNH CLAFMFVNWS FV

Arabidopsis Description

ATHB-14Homeobox-leucine zipper protein ATHB-14 [Source:UniProtKB/Swiss-Prot;Acc:O04291]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.