Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P17670_001 | Banana | nucleus | 25.92 | 42.4 |
| KRH21495 | Soybean | nucleus | 27.89 | 35.61 |
| VIT_00s0652g00010.t01 | Wine grape | nucleus | 29.58 | 35.59 |
| GSMUA_Achr7P15150_001 | Banana | nucleus | 18.03 | 35.36 |
| GSMUA_Achr4P30470_001 | Banana | nucleus | 15.49 | 34.16 |
| KRH10827 | Soybean | nucleus | 26.76 | 33.33 |
| KRH50000 | Soybean | nucleus | 30.42 | 32.53 |
| KRH20497 | Soybean | nucleus | 30.14 | 31.85 |
| Solyc02g078620.1.1 | Tomato | nucleus | 23.1 | 28.87 |
| GSMUA_Achr6P33410_001 | Banana | nucleus | 20.0 | 28.74 |
| PGSC0003DMT400057782 | Potato | mitochondrion | 22.82 | 28.72 |
| GSMUA_Achr10P... | Banana | nucleus | 23.38 | 28.62 |
| GSMUA_Achr5P28660_001 | Banana | nucleus | 20.85 | 26.71 |
| GSMUA_Achr5P23930_001 | Banana | nucleus | 14.65 | 26.67 |
| GSMUA_Achr9P03270_001 | Banana | nucleus | 16.34 | 26.13 |
| Bra020261.1-P | Field mustard | nucleus | 17.46 | 26.05 |
| CDX80191 | Canola | nucleus | 18.03 | 24.9 |
| CDY31568 | Canola | nucleus | 18.03 | 24.81 |
| GSMUA_Achr1P03930_001 | Banana | nucleus | 17.75 | 24.51 |
| AT5G60200.1 | Thale cress | nucleus | 17.75 | 24.51 |
| CDX71050 | Canola | nucleus | 17.46 | 24.51 |
| AT3G45610.1 | Thale cress | nucleus | 16.9 | 24.49 |
| Bra002504.1-P | Field mustard | nucleus | 17.75 | 24.42 |
| CDY09221 | Canola | nucleus | 17.75 | 24.42 |
| GSMUA_Achr3P18260_001 | Banana | nucleus | 15.21 | 24.11 |
| GSMUA_Achr1P20550_001 | Banana | nucleus | 18.31 | 24.07 |
| GSMUA_Achr8P32880_001 | Banana | nucleus | 16.9 | 24.0 |
| GSMUA_Achr4P27160_001 | Banana | nucleus | 18.87 | 23.93 |
| GSMUA_Achr11P... | Banana | nucleus | 18.31 | 23.9 |
| GSMUA_Achr3P13830_001 | Banana | nucleus | 18.31 | 23.9 |
| GSMUA_Achr11P... | Banana | nucleus | 19.72 | 23.81 |
| GSMUA_Achr8P02150_001 | Banana | nucleus | 22.25 | 23.8 |
| GSMUA_Achr5P19980_001 | Banana | nucleus | 17.75 | 23.68 |
| GSMUA_Achr8P02600_001 | Banana | nucleus | 18.59 | 23.4 |
| GSMUA_Achr5P29110_001 | Banana | nucleus | 22.25 | 23.24 |
| GSMUA_Achr5P15160_001 | Banana | nucleus | 18.87 | 22.95 |
| GSMUA_Achr8P11850_001 | Banana | nucleus | 19.15 | 22.82 |
| GSMUA_Achr3P10670_001 | Banana | nucleus | 15.21 | 22.78 |
| GSMUA_Achr5P01010_001 | Banana | nucleus | 16.62 | 22.78 |
| CDX88742 | Canola | nucleus | 17.75 | 22.74 |
| GSMUA_Achr11P... | Banana | nucleus | 16.9 | 22.64 |
| Bra006675.1-P | Field mustard | nucleus | 17.46 | 22.38 |
| GSMUA_Achr11P... | Banana | nucleus | 22.25 | 22.01 |
| GSMUA_AchrUn_... | Banana | nucleus | 17.18 | 21.86 |
| GSMUA_Achr10P... | Banana | nucleus | 17.46 | 21.75 |
| GSMUA_Achr10P... | Banana | nucleus | 15.77 | 21.71 |
| GSMUA_Achr10P... | Banana | nucleus | 16.62 | 21.69 |
| GSMUA_Achr9P04290_001 | Banana | nucleus | 17.75 | 21.65 |
| GSMUA_Achr5P07290_001 | Banana | nucleus | 16.62 | 21.53 |
| GSMUA_Achr6P19530_001 | Banana | nucleus | 14.93 | 21.46 |
| GSMUA_Achr6P34180_001 | Banana | nucleus | 20.0 | 21.39 |
| GSMUA_Achr10P... | Banana | nucleus | 20.28 | 21.36 |
| GSMUA_Achr5P07150_001 | Banana | nucleus | 19.72 | 21.21 |
| GSMUA_Achr8P02840_001 | Banana | nucleus | 18.31 | 21.17 |
| GSMUA_Achr6P25190_001 | Banana | nucleus | 15.21 | 21.01 |
| GSMUA_Achr11P... | Banana | nucleus | 17.18 | 20.61 |
| GSMUA_Achr9P11530_001 | Banana | nucleus, plastid | 20.85 | 20.44 |
| GSMUA_Achr2P23020_001 | Banana | nucleus | 15.77 | 20.36 |
| GSMUA_Achr3P29620_001 | Banana | nucleus | 16.34 | 20.35 |
| GSMUA_Achr9P25010_001 | Banana | nucleus | 17.18 | 19.93 |
| GSMUA_Achr10P... | Banana | nucleus | 16.34 | 19.86 |
| GSMUA_Achr8P15860_001 | Banana | nucleus, plastid | 20.28 | 19.78 |
| GSMUA_Achr9P26560_001 | Banana | nucleus | 16.9 | 18.93 |
| GSMUA_Achr9P09650_001 | Banana | nucleus | 16.06 | 18.87 |
| Zm00001d029512_P001 | Maize | nucleus | 18.03 | 18.23 |
| GSMUA_Achr10P... | Banana | nucleus | 17.46 | 17.82 |
| Os07t0508900-00 | Rice | cytosol | 1.97 | 17.5 |
| GSMUA_Achr7P27030_001 | Banana | nucleus, plastid | 15.77 | 17.18 |
| GSMUA_Achr4P16590_001 | Banana | nucleus | 16.06 | 16.62 |
| GSMUA_Achr2P09970_001 | Banana | nucleus | 18.59 | 15.28 |
| CDY08776 | Canola | nucleus | 1.69 | 6.98 |
| HORVU2Hr1G047750.4 | Barley | plastid | 3.1 | 4.87 |
| TraesCS1B01G185700.1 | Wheat | cytosol | 2.54 | 4.15 |
| TraesCS6A01G233700.1 | Wheat | cytosol, mitochondrion, nucleus | 2.25 | 3.69 |
| Os07t0508700-00 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| InterPro:11S_seedstore_pln | MapMan:15.5.1.5 | Gene3D:2.60.120.10 | InterPro:Cupin_1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045735 | EnsemblPlantsGene:GSMUA_Achr5G12010_001 | EnsemblPlants:GSMUA_Achr5P12010_001 | EnsemblPlants:GSMUA_Achr5T12010_001 | InterPro:IPR003851 | InterPro:IPR014710 |
| UniProt:M0SXT0 | PFAM:PD007478 | PFAM:PF00190 | PFAM:PF02701 | PRINTS:PR00439 | ScanProsite:PS01361 |
| PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF81 | InterPro:RmlC-like_jellyroll | InterPro:RmlC_Cupin_sf | SMART:SM00835 |
| SUPFAM:SSF51182 | UniParc:UPI0002957D40 | InterPro:Znf_Dof | SEG:seg | : | : |
Description
Zinc finger protein, putative [Source:GMGC_GENE;Acc:GSMUA_Achr5G12010_001]
Coordinates
chr5:-:8699371..8708262
Molecular Weight (calculated)
39059.1 Da
IEP (calculated)
8.777
GRAVY (calculated)
-0.359
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLSSKLATS DAGLDWSQEL LDKGGLLQVP QPMSQARNNQ QQKQHWPPLK CPRCDSTNTK FCYYNNYSRT QPRHFCKACR RHWTEGGTLR NVPVGGGRKN
101: KRSKATPAAT NTTSTTAPGA AVPLLFGGDH SSNIFPEILR QVLLRQPPPP LPQLQLAPSD YSFSSPFSSD PHSKPTLANS SDGNNNTPFP ISSSYSYPLA
201: SVSEECLATI NPCSTASAWQ VGQVTAALPR SIGGMDHSST DYWSGWDDEM AGFSAVRGLL CLNAISSPHW NVNTHIIVYA LRGCSRVQVV GHRGRTVFDG
301: ELRQVHLLVV LYYFAVMFQA QNESFEWVTM KTNDNVMVSH FTGKVSALRS IPVEI
101: KRSKATPAAT NTTSTTAPGA AVPLLFGGDH SSNIFPEILR QVLLRQPPPP LPQLQLAPSD YSFSSPFSSD PHSKPTLANS SDGNNNTPFP ISSSYSYPLA
201: SVSEECLATI NPCSTASAWQ VGQVTAALPR SIGGMDHSST DYWSGWDDEM AGFSAVRGLL CLNAISSPHW NVNTHIIVYA LRGCSRVQVV GHRGRTVFDG
301: ELRQVHLLVV LYYFAVMFQA QNESFEWVTM KTNDNVMVSH FTGKVSALRS IPVEI
001: MQDLTSAAAY YHQSMMMTTA KQNQPELPEQ EQLKCPRCDS PNTKFCYYNN YNLSQPRHFC KNCRRYWTKG GALRNIPVGG GTRKSNKRSG SSPSSNLKNQ
101: TVAEKPDHHG SGSEEKEERV SGQEMNPTRM LYGLPVGDPN GASFSSLLAS NMQMGGLVYE SGSRWLPGMD LGLGSVRRSD DTWTDLAMNR MEKN
101: TVAEKPDHHG SGSEEKEERV SGQEMNPTRM LYGLPVGDPN GASFSSLLAS NMQMGGLVYE SGSRWLPGMD LGLGSVRRSD DTWTDLAMNR MEKN
Arabidopsis Description
DOF1.7Dof zinc finger protein DOF1.7 [Source:UniProtKB/Swiss-Prot;Acc:O82155]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.