Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 76.9 | 59.33 |
| GSMUA_Achr7P15150_001 | Banana | nucleus | 36.46 | 55.8 |
| GSMUA_Achr10P... | Banana | nucleus | 51.99 | 49.66 |
| GSMUA_Achr8P02150_001 | Banana | nucleus | 59.21 | 49.4 |
| GSMUA_Achr6P33410_001 | Banana | nucleus | 42.96 | 48.18 |
| GSMUA_Achr5P07150_001 | Banana | nucleus | 54.87 | 46.06 |
| GSMUA_Achr5P29110_001 | Banana | nucleus | 54.15 | 44.12 |
| GSMUA_Achr10P... | Banana | nucleus | 51.62 | 42.43 |
| GSMUA_Achr8P02600_001 | Banana | nucleus | 42.24 | 41.49 |
| GSMUA_Achr9P03270_001 | Banana | nucleus | 31.05 | 38.74 |
| PGSC0003DMT400078164 | Potato | nucleus | 43.32 | 37.5 |
| Solyc06g076030.2.1 | Tomato | nucleus | 42.96 | 35.63 |
| GSMUA_Achr6P34180_001 | Banana | nucleus | 42.24 | 35.24 |
| GSMUA_Achr4P30470_001 | Banana | nucleus | 20.22 | 34.78 |
| GSMUA_Achr1P20550_001 | Banana | nucleus | 28.16 | 28.89 |
| GSMUA_Achr10P... | Banana | nucleus | 25.99 | 27.91 |
| GSMUA_Achr8P32880_001 | Banana | nucleus | 24.91 | 27.6 |
| GSMUA_Achr6P25190_001 | Banana | nucleus | 25.27 | 27.24 |
| GSMUA_Achr3P13830_001 | Banana | nucleus | 25.99 | 26.47 |
| GSMUA_Achr3P18260_001 | Banana | nucleus | 21.3 | 26.34 |
| GSMUA_Achr11P... | Banana | nucleus | 27.8 | 26.19 |
| GSMUA_Achr11P... | Banana | nucleus | 24.91 | 26.04 |
| GSMUA_Achr1P03930_001 | Banana | nucleus | 23.83 | 25.68 |
| GSMUA_Achr5P19980_001 | Banana | nucleus | 24.55 | 25.56 |
| GSMUA_Achr10P... | Banana | nucleus | 24.91 | 25.37 |
| GSMUA_Achr5P23930_001 | Banana | nucleus | 17.69 | 25.13 |
| GSMUA_Achr2P23020_001 | Banana | nucleus | 24.91 | 25.09 |
| GSMUA_Achr8P11850_001 | Banana | nucleus | 26.71 | 24.83 |
| GSMUA_Achr11P... | Banana | nucleus | 24.19 | 24.63 |
| GSMUA_Achr5P15160_001 | Banana | nucleus | 25.27 | 23.97 |
| GSMUA_Achr1P17670_001 | Banana | nucleus | 18.77 | 23.96 |
| GSMUA_Achr4P27160_001 | Banana | nucleus | 24.19 | 23.93 |
| GSMUA_Achr5P07290_001 | Banana | nucleus | 23.47 | 23.72 |
| GSMUA_Achr9P04290_001 | Banana | nucleus | 24.55 | 23.37 |
| GSMUA_Achr3P10670_001 | Banana | nucleus | 19.86 | 23.21 |
| GSMUA_Achr10P... | Banana | nucleus | 23.83 | 23.16 |
| GSMUA_Achr3P29620_001 | Banana | nucleus | 23.83 | 23.16 |
| GSMUA_Achr5P01010_001 | Banana | nucleus | 21.3 | 22.78 |
| GSMUA_Achr11P... | Banana | nucleus | 24.19 | 22.64 |
| GSMUA_Achr8P15860_001 | Banana | nucleus, plastid | 29.6 | 22.53 |
| GSMUA_Achr7P27030_001 | Banana | nucleus, plastid | 26.35 | 22.39 |
| GSMUA_Achr9P11530_001 | Banana | nucleus, plastid | 29.24 | 22.38 |
| GSMUA_Achr9P25010_001 | Banana | nucleus | 24.19 | 21.9 |
| GSMUA_Achr6P19530_001 | Banana | nucleus | 19.49 | 21.86 |
| GSMUA_Achr4P16590_001 | Banana | nucleus | 26.71 | 21.57 |
| GSMUA_Achr10P... | Banana | nucleus | 22.38 | 21.23 |
| GSMUA_Achr8P02840_001 | Banana | nucleus | 23.47 | 21.17 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.3 | 21.15 |
| GSMUA_Achr5P12010_001 | Banana | nucleus | 26.71 | 20.85 |
| GSMUA_Achr9P26560_001 | Banana | nucleus | 23.1 | 20.19 |
| GSMUA_Achr10P... | Banana | nucleus | 24.55 | 19.54 |
| GSMUA_Achr9P09650_001 | Banana | nucleus | 20.94 | 19.21 |
| GSMUA_Achr2P09970_001 | Banana | nucleus | 25.99 | 16.67 |
Protein Annotations
| MapMan:15.5.1.5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr5G28660_001 | EnsemblPlants:GSMUA_Achr5P28660_001 | EnsemblPlants:GSMUA_Achr5T28660_001 |
| InterPro:IPR003851 | UniProt:M0T2J0 | PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 |
| PANTHER:PTHR31992 | PANTHER:PTHR31992:SF66 | UniParc:UPI0002962F19 | InterPro:Znf_Dof | SEG:seg | : |
Description
Putative Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr5G28660_001]
Coordinates
chr5:+:28744344..28745584
Molecular Weight (calculated)
28687.9 Da
IEP (calculated)
10.403
GRAVY (calculated)
-0.440
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFPSVPVYL DPPNWNQQLQ AHQQGSSSGG GASQLPPGMA APRPEGGMSA TIRPGSMVDR ARLAKIPQPE PGLKCPRCDS TNTKFCYFNN YSLSQPRHFC
101: KTCRRYWTRG GALRNVPVGG GCRRNKRTKS AGGSASSGSG APLGGGIGME NLRLPQMQQF SSLGGLDLPQ PPAPAPTSGF FPFVGEGGGF VGGSFTWQVQ
201: TKPVGSGLIT QLASVKMEDS QQLFNFPRPH LGMSRNDPFW SGSGSGGGGG GGGASSSGTG GWATDLSGFN SSSGSIL
101: KTCRRYWTRG GALRNVPVGG GCRRNKRTKS AGGSASSGSG APLGGGIGME NLRLPQMQQF SSLGGLDLPQ PPAPAPTSGF FPFVGEGGGF VGGSFTWQVQ
201: TKPVGSGLIT QLASVKMEDS QQLFNFPRPH LGMSRNDPFW SGSGSGGGGG GGGASSSGTG GWATDLSGFN SSSGSIL
001: MVFSSIQAYL DSSNWQQAPP SNYNHDGTGA SANGGHVLRP QLQPQQQPQQ QPHPNGSGGG GGGGGGSIRA GSMVDRARQA NVALPEAALK CPRCESTNTK
101: FCYFNNYSLT QPRHFCKTCR RYWTRGGALR NVPVGGGCRR NRRTKSNSNN NNNSTATSNN TSFSSGNAST ISTILSSHYG GNQESILSQI LSPARLMNPT
201: YNHLGDLTSN TKTDNNMSLL NYGGLSQDLR SIHMGASGGS LMSCVDEWRS ASYHQQSSMG GGNLEDSSNP NPSANGFYSF ESPRITSASI SSALASQFSS
301: VKVEDNPYKW VNVNGNCSSW NDLSAFGSSR
101: FCYFNNYSLT QPRHFCKTCR RYWTRGGALR NVPVGGGCRR NRRTKSNSNN NNNSTATSNN TSFSSGNAST ISTILSSHYG GNQESILSQI LSPARLMNPT
201: YNHLGDLTSN TKTDNNMSLL NYGGLSQDLR SIHMGASGGS LMSCVDEWRS ASYHQQSSMG GGNLEDSSNP NPSANGFYSF ESPRITSASI SSALASQFSS
301: VKVEDNPYKW VNVNGNCSSW NDLSAFGSSR
Arabidopsis Description
DOF2.4Dof zinc finger protein DOF2.4 [Source:UniProtKB/Swiss-Prot;Acc:O80928]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.