Factsheet for GSMUA_Achr3P13830_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P04290_001	Banana	nucleus	62.87	58.76
GSMUA_Achr5P07290_001	Banana	nucleus	48.9	48.54
VIT_06s0004g03420.t01	Wine grape	nucleus	51.47	47.3
KRH24943	Soybean	nucleus	52.57	46.89
KRG89059	Soybean	nucleus	52.21	45.81
KRH22943	Soybean	nucleus	44.49	42.46
KRH10402	Soybean	nucleus	43.75	41.75
PGSC0003DMT400019416	Potato	nucleus	45.22	40.73
Solyc06g075370.2.1	Tomato	nucleus	45.22	40.59
Solyc11g072500.1.1	Tomato	nucleus	41.91	40.0
PGSC0003DMT400065271	Potato	nucleus	42.65	38.8
GSMUA_Achr4P30470_001	Banana	nucleus	22.06	37.27
GSMUA_Achr10P...	Banana	nucleus	33.46	31.93
GSMUA_Achr11P...	Banana	nucleus	30.88	31.7
GSMUA_Achr7P15150_001	Banana	nucleus	20.59	30.94
GSMUA_Achr10P...	Banana	nucleus	30.51	30.51
GSMUA_Achr3P18260_001	Banana	nucleus	25.0	30.36
GSMUA_Achr11P...	Banana	nucleus	30.51	28.04
GSMUA_Achr1P03930_001	Banana	nucleus	26.47	28.02
GSMUA_Achr6P33410_001	Banana	nucleus	25.37	27.94
GSMUA_Achr11P...	Banana	nucleus	29.78	27.55
CDY53379	Canola	nucleus	22.06	27.4
GSMUA_Achr5P23930_001	Banana	nucleus	19.49	27.18
GSMUA_Achr8P32880_001	Banana	nucleus	24.63	26.8
GSMUA_Achr5P28660_001	Banana	nucleus	26.47	25.99
GSMUA_Achr10P...	Banana	nucleus	24.63	25.97
GSMUA_Achr5P19980_001	Banana	nucleus	25.37	25.94
GSMUA_Achr8P11850_001	Banana	nucleus	28.31	25.84
GSMUA_Achr11P...	Banana	nucleus	25.74	25.74
GSMUA_Achr4P27160_001	Banana	nucleus	26.47	25.71
GSMUA_Achr3P10670_001	Banana	nucleus	22.06	25.32
GSMUA_Achr9P03270_001	Banana	nucleus	20.59	25.23
GSMUA_Achr10P...	Banana	nucleus	26.84	25.17
GSMUA_Achr5P15160_001	Banana	nucleus	26.1	24.32
CDX77184	Canola	nucleus	22.79	24.22
Bra035696.1-P	Field mustard	nucleus	22.79	24.22
GSMUA_Achr2P23020_001	Banana	nucleus	24.26	24.0
GSMUA_Achr6P25190_001	Banana	nucleus	22.06	23.35
GSMUA_Achr1P17670_001	Banana	nucleus	18.38	23.04
GSMUA_Achr1P20550_001	Banana	nucleus	22.79	22.96
GSMUA_Achr5P01010_001	Banana	nucleus	21.69	22.78
GSMUA_Achr8P02600_001	Banana	nucleus	23.53	22.7
GSMUA_Achr8P02150_001	Banana	nucleus	27.57	22.59
GSMUA_Achr9P25010_001	Banana	nucleus	25.37	22.55
GSMUA_Achr8P02840_001	Banana	nucleus	25.0	22.15
GSMUA_Achr11P...	Banana	nucleus	29.04	22.01
GSMUA_Achr6P34180_001	Banana	nucleus	26.84	21.99
GSMUA_AchrUn_...	Banana	nucleus	22.43	21.86
GSMUA_Achr5P07150_001	Banana	nucleus	26.47	21.82
GSMUA_Achr5P29110_001	Banana	nucleus	27.21	21.76
GSMUA_Achr9P11530_001	Banana	nucleus, plastid	28.31	21.27
AT2G28510.1	Thale cress	nucleus	22.43	21.18
GSMUA_Achr3P29620_001	Banana	nucleus	22.06	21.05
PGSC0003DMT400075051	Potato	nucleus	22.43	20.96
GSMUA_Achr9P09650_001	Banana	nucleus	23.16	20.86
GSMUA_Achr8P15860_001	Banana	nucleus, plastid	27.57	20.6
GSMUA_Achr10P...	Banana	nucleus	25.37	20.47
GSMUA_Achr7P27030_001	Banana	nucleus, plastid	23.9	19.94
GSMUA_Achr10P...	Banana	nucleus	21.32	19.86
GSMUA_Achr6P19530_001	Banana	nucleus	18.01	19.84
GSMUA_Achr10P...	Banana	nucleus	25.37	19.83
Solyc06g005130.2.1	Tomato	nucleus	21.69	19.16
GSMUA_Achr9P26560_001	Banana	nucleus	22.06	18.93
GSMUA_Achr4P16590_001	Banana	nucleus	23.53	18.66
GSMUA_Achr5P12010_001	Banana	nucleus	23.9	18.31
GSMUA_Achr2P09970_001	Banana	nucleus	27.94	17.59

Protein Annotations

MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G13830_001	EnsemblPlants:GSMUA_Achr3P13830_001	EnsemblPlants:GSMUA_Achr3T13830_001
InterPro:IPR003851	UniProt:M0SEF0	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	PANTHER:PTHR31992:SF69	UniParc:UPI0002952D2D	InterPro:Znf_Dof	SEG:seg	:

Description

Zinc finger protein, putative [Source:GMGC_GENE;Acc:GSMUA_Achr3G13830_001]

Coordinates

chr3:-:12551185..12552003

Molecular Weight (calculated)

29807.9 Da

IEP (calculated)

7.875

GRAVY (calculated)

-0.658

Length

272 amino acids

Sequence
(BLAST)

001: MASLPLEGTL TGCQNLQRQQ QQQERKVRPQ PEQSLKCPRC ESTNTKFCYY NNYSLSQPRH FCKGCRRYWT KGGSLRNVPV GGGCRKNKKS SSKRPQHQSF
101: TTISNPPLLA YDPSGLSLAL ASLQKQHHDP GRSLDDHETF LLGNPILDDP TAPPAGFLDM MRTGFLDGTT DYSSSFHNLY CGYGGNGSTD VEVGLPFGGG
201: LGGATTTTAT TVTTTSQLSC RDLDREEDKM LVGLQWQVGG DCNMALDSTR DHCSWNGTVG SNWHSLINSS LM

Best Arabidopsis Sequence Match ( AT5G60200.1 )
(BLAST)

001: MDHLLQHQDV FGNYNKAREA MGLSYSSNPT PLDNDQKKPS PATAVTRPQP PELALRCPRC DSTNTKFCYY NNYSLTQPRY FCKSCRRYWT KGGTLRNIPV
101: GGGCRKNKRS TSSAARSLRT TPEPASHDGK VFSAAGFNGY SNNEHIDLSL AFALLNKQHP GSSSQLGFHS ELGSSHQSDM EGMFGTSQQK ENATYAFGNG
201: SSGLGDPSRV LWGFPWQMNG ESFGMMNIGG GGGHVDQIDS GREMWTNMNY INSGALM

Arabidopsis Description

DOF5.3Dof zinc finger protein DOF5.3 [Source:UniProtKB/Swiss-Prot;Acc:Q84TE9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.