Factsheet for GSMUA_Achr5P07150_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	69.39	67.95
GSMUA_Achr7P15150_001	Banana	nucleus	33.94	61.88
GSMUA_Achr5P28660_001	Banana	nucleus	46.06	54.87
GSMUA_Achr6P33410_001	Banana	nucleus	37.88	50.61
GSMUA_Achr8P02600_001	Banana	nucleus	41.52	48.58
GSMUA_Achr8P02150_001	Banana	nucleus	48.79	48.49
GSMUA_Achr10P...	Banana	nucleus	42.12	47.93
GSMUA_Achr11P...	Banana	nucleus	50.91	46.8
GSMUA_Achr5P29110_001	Banana	nucleus	45.15	43.82
GSMUA_Achr9P03270_001	Banana	nucleus	28.79	42.79
GSMUA_Achr6P34180_001	Banana	nucleus	43.03	42.77
KRG99864	Soybean	nucleus	42.73	38.84
KRH46814	Soybean	nucleus	42.12	37.87
GSMUA_Achr4P30470_001	Banana	nucleus	18.18	37.27
KRH70477	Soybean	nucleus	41.82	37.2
GSMUA_Achr1P20550_001	Banana	nucleus	24.24	29.63
Solyc11g066050.1.1	Tomato	nucleus	28.48	29.47
PGSC0003DMT400001174	Potato	nucleus	22.73	29.3
GSMUA_Achr5P19980_001	Banana	nucleus	23.33	28.95
GSMUA_Achr3P10670_001	Banana	nucleus	20.3	28.27
GSMUA_Achr3P18260_001	Banana	nucleus	19.09	28.12
GSMUA_Achr1P03930_001	Banana	nucleus	21.52	27.63
GSMUA_Achr8P32880_001	Banana	nucleus	20.91	27.6
GSMUA_Achr10P...	Banana	nucleus	21.52	27.52
GSMUA_Achr8P11850_001	Banana	nucleus	24.85	27.52
GSMUA_Achr11P...	Banana	nucleus	24.24	27.21
GSMUA_Achr5P23930_001	Banana	nucleus	16.06	27.18
GSMUA_Achr3P13830_001	Banana	nucleus	21.82	26.47
GSMUA_Achr4P27160_001	Banana	nucleus	22.12	26.07
GSMUA_Achr11P...	Banana	nucleus	21.21	25.74
GSMUA_Achr11P...	Banana	nucleus	20.61	25.66
GSMUA_Achr10P...	Banana	nucleus	20.91	25.37
GSMUA_Achr5P15160_001	Banana	nucleus	22.42	25.34
GSMUA_Achr10P...	Banana	nucleus	21.82	25.26
GSMUA_Achr2P23020_001	Banana	nucleus	20.91	25.09
GSMUA_Achr9P11530_001	Banana	nucleus, plastid	26.97	24.59
GSMUA_Achr5P07290_001	Banana	nucleus	20.3	24.45
GSMUA_Achr6P25190_001	Banana	nucleus	18.79	24.12
GSMUA_AchrUn_...	Banana	nucleus	20.3	24.01
GSMUA_Achr1P17670_001	Banana	nucleus	15.76	23.96
GSMUA_Achr8P15860_001	Banana	nucleus, plastid	26.36	23.9
GSMUA_Achr11P...	Banana	nucleus	21.21	23.65
GSMUA_Achr5P01010_001	Banana	nucleus	18.18	23.17
GSMUA_Achr3P29620_001	Banana	nucleus	19.39	22.46
GSMUA_Achr10P...	Banana	nucleus	19.7	22.26
GSMUA_Achr8P02840_001	Banana	nucleus	20.3	21.82
GSMUA_Achr7P27030_001	Banana	nucleus, plastid	21.52	21.78
GSMUA_Achr9P04290_001	Banana	nucleus	19.09	21.65
GSMUA_Achr6P19530_001	Banana	nucleus	16.06	21.46
GSMUA_Achr9P25010_001	Banana	nucleus	19.7	21.24
GSMUA_Achr10P...	Banana	nucleus	21.52	20.4
GSMUA_Achr9P26560_001	Banana	nucleus	19.39	20.19
GSMUA_Achr9P09650_001	Banana	nucleus	18.18	19.87
GSMUA_Achr5P12010_001	Banana	nucleus	21.21	19.72
GSMUA_Achr4P16590_001	Banana	nucleus	20.3	19.53
GSMUA_Achr2P09970_001	Banana	nucleus	23.94	18.29

Protein Annotations

MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr5G07150_001	EnsemblPlants:GSMUA_Achr5P07150_001	EnsemblPlants:GSMUA_Achr5T07150_001
InterPro:IPR003851	UniProt:M0SWE4	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	PANTHER:PTHR31992:SF66	UniParc:UPI000295E35E	InterPro:Znf_Dof	SEG:seg	:

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr5G07150_001]

Coordinates

chr5:-:5166897..5168042

Molecular Weight (calculated)

35216.6 Da

IEP (calculated)

9.298

GRAVY (calculated)

-0.499

Length

330 amino acids

Sequence
(BLAST)

001: MVFPSFPVYL DPPYWNQQQA HQLGGGYGGG GSELPQLAPP PGLVGAPRGT VSSIRPGSMA ARARLAKMAQ PEQALKCPRC DSTNTKFCYF NNYSLSQPRH
101: FCKTCRRYWT RGGALRNVPV GGGCRRKKRT KCGDSSSSSK SSVTSAGRQS GATTSSTTLQ PQPLPTTSLH PLPDCRAPNV GSSFAGIQSS DAVDYQMSGN
201: GSVGLENSRL HNQIQQFPPF MGGMEPPPPR PPPPPSVPSL APVPSLYPSF IQEDSELDGR SFASPLQSKV LGSGLLMQLA SVKMDDNAQE LTLPRPLSGG
301: FRDELIWGGS SGGWATCFSS FNSPSNDNFM

Best Arabidopsis Sequence Match ( AT2G37590.1 )
(BLAST)

001: MVFSSIQAYL DSSNWQQAPP SNYNHDGTGA SANGGHVLRP QLQPQQQPQQ QPHPNGSGGG GGGGGGSIRA GSMVDRARQA NVALPEAALK CPRCESTNTK
101: FCYFNNYSLT QPRHFCKTCR RYWTRGGALR NVPVGGGCRR NRRTKSNSNN NNNSTATSNN TSFSSGNAST ISTILSSHYG GNQESILSQI LSPARLMNPT
201: YNHLGDLTSN TKTDNNMSLL NYGGLSQDLR SIHMGASGGS LMSCVDEWRS ASYHQQSSMG GGNLEDSSNP NPSANGFYSF ESPRITSASI SSALASQFSS
301: VKVEDNPYKW VNVNGNCSSW NDLSAFGSSR

Arabidopsis Description

DOF2.4Dof zinc finger protein DOF2.4 [Source:UniProtKB/Swiss-Prot;Acc:O80928]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.