Factsheet for PGSC0003DMT400001174

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g066050.1.1	Tomato	nucleus	93.36	74.92
GSMUA_Achr7P15150_001	Banana	nucleus	24.61	34.81
PGSC0003DMT400078164	Potato	nucleus	28.52	22.81
GSMUA_Achr5P07150_001	Banana	nucleus	29.3	22.73
PGSC0003DMT400058729	Potato	nucleus	17.19	22.34
KRH70477	Soybean	nucleus	32.03	22.1
PGSC0003DMT400060216	Potato	nucleus	25.39	21.52
PGSC0003DMT400033382	Potato	nucleus	21.09	20.93
PGSC0003DMT400047705	Potato	nucleus	21.09	20.69
KRG99864	Soybean	nucleus	29.3	20.66
KRH46814	Soybean	nucleus	28.91	20.16
PGSC0003DMT400019416	Potato	nucleus	23.44	19.87
PGSC0003DMT400076397	Potato	nucleus	21.48	19.3
PGSC0003DMT400000349	Potato	nucleus	19.92	19.25
PGSC0003DMT400049288	Potato	nucleus	27.73	18.98
PGSC0003DMT400002060	Potato	nucleus	19.53	18.8
PGSC0003DMT400023033	Potato	nucleus	29.3	18.61
PGSC0003DMT400057782	Potato	mitochondrion	19.92	18.09
PGSC0003DMT400048612	Potato	nucleus	19.14	18.08
PGSC0003DMT400065271	Potato	nucleus	21.09	18.06
PGSC0003DMT400075051	Potato	nucleus	20.31	17.87
PGSC0003DMT400069680	Potato	nucleus	19.53	17.86
PGSC0003DMT400010397	Potato	nucleus	21.88	17.55
PGSC0003DMT400041580	Potato	nucleus	25.39	17.2
PGSC0003DMT400025984	Potato	nucleus	18.75	17.14
PGSC0003DMT400031928	Potato	nucleus	21.09	16.27
PGSC0003DMT400046598	Potato	nucleus	20.7	16.06
PGSC0003DMT400076447	Potato	nucleus	24.61	15.83
PGSC0003DMT400055052	Potato	nucleus	18.75	15.34

Protein Annotations

MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	UniProt:M0ZI13	PFAM:PD007478
PFAM:PF02701	EnsemblPlantsGene:PGSC0003DMG400000441	PGSC:PGSC0003DMG400000441	EnsemblPlants:PGSC0003DMT400001174	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	PANTHER:PTHR31992:SF66	UniParc:UPI0002967CF6	InterPro:Znf_Dof	SEG:seg	:

Description

Dof zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000441]

Coordinates

chr11:-:38677148..38678388

Molecular Weight (calculated)

27943.4 Da

IEP (calculated)

9.086

GRAVY (calculated)

-0.766

Length

256 amino acids

Sequence
(BLAST)

001: MADRARIAKL SLPEAGLKCP RCDSSNTKFC YFNNYSLSQP RHFCKNCRRY WTRGGALRNV PVGGGCRRNK RNKSSNNNNS AKSGGGGGQV GNTTNNASTS
101: AIPSSCNMEM IGHHFSQSST QFTSLMGAFQ NLNNYGGLIQ PPPHQLVGEM GFQIGSNNLL PSLVASNNFE HPTNLYPNFQ NEGPTTTTTT IEASNGVTQQ
201: VKMEDNNRQG MDSSTKQFLG TLENNNQYWG VANENSWIGF SSDLNNNSPS TTNHLL

Best Arabidopsis Sequence Match ( AT3G55370.2 )
(BLAST)

001: MVFSSLPVNQ FDSQNWQQQG NQHQLECVTT DQNPNNYLRQ LSSPPTSQVA GSSQARVNSM VERARIAKVP LPEAALNCPR CDSTNTKFCY FNNYSLTQPR
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGKGGVNQG DSQQKSSDYS NQLMFKPLMD FSSGGVSATQ TRNVKAEEND
301: QDRGRDGDGV NNLSRNFLGN ININSGRNEE YTSWGGNSSW TGFTSNNSTG HLSF

Arabidopsis Description

OBP3OBF-binding protein 3 [Source:UniProtKB/TrEMBL;Acc:F4IWU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.