Factsheet for PGSC0003DMT400057782

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g078620.1.1	Tomato	nucleus	93.26	92.61
KRH21495	Soybean	nucleus	41.13	41.73
PGSC0003DMT400058729	Potato	nucleus	29.08	41.62
KRH10827	Soybean	nucleus	40.07	39.65
KRH50000	Soybean	nucleus	40.43	34.34
KRH20497	Soybean	nucleus	40.43	33.93
VIT_00s0652g00010.t01	Wine grape	nucleus	34.4	32.88
GSMUA_Achr1P17670_001	Banana	nucleus	21.99	28.57
GSMUA_Achr5P12010_001	Banana	nucleus	28.72	22.82
PGSC0003DMT400048612	Potato	nucleus	19.86	20.66
PGSC0003DMT400000349	Potato	nucleus	19.15	20.38
PGSC0003DMT400060216	Potato	nucleus	21.63	20.2
PGSC0003DMT400025984	Potato	nucleus	19.86	20.0
PGSC0003DMT400047705	Potato	nucleus	18.44	19.92
PGSC0003DMT400001174	Potato	nucleus	18.09	19.92
PGSC0003DMT400019416	Potato	nucleus	21.28	19.87
PGSC0003DMT400033382	Potato	nucleus	18.09	19.77
PGSC0003DMT400010397	Potato	nucleus	21.99	19.44
PGSC0003DMT400078164	Potato	nucleus	21.99	19.38
PGSC0003DMT400076397	Potato	nucleus	19.15	18.95
PGSC0003DMT400069680	Potato	nucleus	18.79	18.93
PGSC0003DMT400065271	Potato	nucleus	19.5	18.39
PGSC0003DMT400075051	Potato	nucleus	18.09	17.53
PGSC0003DMT400002060	Potato	nucleus	16.31	17.29
PGSC0003DMT400076447	Potato	nucleus	23.76	16.83
PGSC0003DMT400049288	Potato	nucleus	21.99	16.58
PGSC0003DMT400031928	Potato	nucleus	19.5	16.57
PGSC0003DMT400023033	Potato	nucleus	22.7	15.88
PGSC0003DMT400046598	Potato	nucleus	18.09	15.45
PGSC0003DMT400055052	Potato	nucleus	17.02	15.34
PGSC0003DMT400041580	Potato	nucleus	20.21	15.08
Os07t0508900-00	Rice	cytosol	2.13	15.0
Os07t0508700-00	Rice	cytosol	1.06	2.88

Protein Annotations

EntrezGene:102604286	MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	UniProt:M1C1N1
PFAM:PD007478	PFAM:PF02701	EnsemblPlantsGene:PGSC0003DMG400022431	PGSC:PGSC0003DMG400022431	EnsemblPlants:PGSC0003DMT400057782	ScanProsite:PS01361
PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF81	UniParc:UPI000295C197	RefSeq:XP_006347078.1	InterPro:Znf_Dof
SEG:seg	:	:	:	:	:

Description

Zinc finger, Dof-type [Source:PGSC_GENE;Acc:PGSC0003DMG400022431]

Coordinates

chr2:+:34293040..34294168

Molecular Weight (calculated)

32116.4 Da

IEP (calculated)

6.417

GRAVY (calculated)

-0.806

Length

282 amino acids

Sequence
(BLAST)

001: MGLNTKLVSI EDDGLDNWTT TTHNTPPEPP SIRRQPPPKS EQLKCPRCDS INTKFCYYNN YNKSQPRHYC KGCKRHWTEG GTLRNVPIGG GRKNKRLRPT
101: DPVDHITGRK HVRLEVNDQR CPLITTTSMT NSITSSILPS VTIRGNSTIT STIDEDIKNL PSYSLPYDIF SNISQDHGNT HFSLIPNSST NTQLSSNVYY
201: NYEHMGKFDS TILEESTITT IMPITSSNDL LSHEPWKVPE TSNYDLIIDE NMSSNYWNWN EFETLSNAAD LNKAWDDLEI KP

Best Arabidopsis Sequence Match ( AT1G51700.1 )
(BLAST)

001: MQDLTSAAAY YHQSMMMTTA KQNQPELPEQ EQLKCPRCDS PNTKFCYYNN YNLSQPRHFC KNCRRYWTKG GALRNIPVGG GTRKSNKRSG SSPSSNLKNQ
101: TVAEKPDHHG SGSEEKEERV SGQEMNPTRM LYGLPVGDPN GASFSSLLAS NMQMGGLVYE SGSRWLPGMD LGLGSVRRSD DTWTDLAMNR MEKN

Arabidopsis Description

DOF1.7Dof zinc finger protein DOF1.7 [Source:UniProtKB/Swiss-Prot;Acc:O82155]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.