Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400020801 | |
| PGSC0003DMT400030829 | |
| PGSC0003DMT400054421 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400057782 | Potato | mitochondrion | 41.62 | 29.08 |
| Bra020261.1-P | Field mustard | nucleus | 25.89 | 21.43 |
| AT3G45610.1 | Thale cress | nucleus | 23.86 | 19.18 |
| AT5G60200.1 | Thale cress | nucleus | 24.37 | 18.68 |
| PGSC0003DMT400033382 | Potato | nucleus | 23.86 | 18.22 |
| Bra002504.1-P | Field mustard | nucleus | 23.86 | 18.22 |
| PGSC0003DMT400025984 | Potato | nucleus | 25.89 | 18.21 |
| PGSC0003DMT400047705 | Potato | nucleus | 23.86 | 18.01 |
| PGSC0003DMT400076397 | Potato | nucleus | 25.89 | 17.89 |
| PGSC0003DMT400048612 | Potato | nucleus | 24.37 | 17.71 |
| PGSC0003DMT400002060 | Potato | nucleus | 23.86 | 17.67 |
| PGSC0003DMT400078164 | Potato | nucleus | 28.43 | 17.5 |
| PGSC0003DMT400065271 | Potato | nucleus | 26.4 | 17.39 |
| KRH50082 | Soybean | nucleus | 25.38 | 17.36 |
| PGSC0003DMT400001174 | Potato | nucleus | 22.34 | 17.19 |
| PGSC0003DMT400000349 | Potato | nucleus | 22.84 | 16.98 |
| Bra006675.1-P | Field mustard | nucleus | 23.86 | 16.97 |
| PGSC0003DMT400060216 | Potato | nucleus | 25.89 | 16.89 |
| PGSC0003DMT400010397 | Potato | nucleus | 26.9 | 16.61 |
| PGSC0003DMT400019416 | Potato | nucleus | 25.38 | 16.56 |
| PGSC0003DMT400069680 | Potato | nucleus | 23.35 | 16.43 |
| KRH20417 | Soybean | nucleus | 25.38 | 15.24 |
| PGSC0003DMT400031928 | Potato | nucleus | 25.38 | 15.06 |
| PGSC0003DMT400075051 | Potato | nucleus | 21.83 | 14.78 |
| PGSC0003DMT400055052 | Potato | nucleus | 23.35 | 14.7 |
| PGSC0003DMT400046598 | Potato | nucleus | 23.86 | 14.24 |
| Zm00001d029512_P001 | Maize | nucleus | 24.37 | 13.68 |
| PGSC0003DMT400041580 | Potato | nucleus | 25.89 | 13.49 |
| PGSC0003DMT400049288 | Potato | nucleus | 24.87 | 13.1 |
| PGSC0003DMT400076447 | Potato | nucleus | 26.4 | 13.07 |
| PGSC0003DMT400023033 | Potato | nucleus | 26.4 | 12.9 |
| CDY08776 | Canola | nucleus | 4.06 | 9.3 |
| TraesCS1B01G185700.1 | Wheat | cytosol | 5.08 | 4.61 |
| Os03t0276300-00 | Rice | cytosol | 3.05 | 4.32 |
| TraesCS6A01G233700.1 | Wheat | cytosol, mitochondrion, nucleus | 4.57 | 4.15 |
| HORVU2Hr1G047750.4 | Barley | plastid | 4.57 | 3.98 |
Protein Annotations
| MapMan:15.5.1.5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003851 | UniProt:M1C372 | PFAM:PD007478 |
| PFAM:PF02701 | EnsemblPlantsGene:PGSC0003DMG400022814 | PGSC:PGSC0003DMG400022814 | EnsemblPlants:PGSC0003DMT400058729 | ScanProsite:PS01361 | PFscan:PS50884 |
| PANTHER:PTHR31992 | UniParc:UPI00029670F7 | InterPro:Znf_Dof | SEG:seg | : | : |
Description
Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022814]
Coordinates
chr10:-:4574506..4575099
Molecular Weight (calculated)
22563.5 Da
IEP (calculated)
8.637
GRAVY (calculated)
-0.764
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: NIYIFDNLVM KTTKPTKPLK CPRCESTNIK FCYYNNYNKS QPRYLCKGCK RYWTQGGLLR NLPIGGGRKN KLKITSTSRD DNRAGHGECK VSLTLSSPKI
101: FNPSCPAPTT SDITREKSST SQLYETNIPF SIPTSTTSSN IYNYMENLDS NMEEESTITW QGPIRSSVMN NLSNYWNWED IEALISVDDF KNEFGWN
101: FNPSCPAPTT SDITREKSST SQLYETNIPF SIPTSTTSSN IYNYMENLDS NMEEESTITW QGPIRSSVMN NLSNYWNWED IEALISVDDF KNEFGWN
001: MDHLLQHQDV FGNYNKAREA MGLSYSSNPT PLDNDQKKPS PATAVTRPQP PELALRCPRC DSTNTKFCYY NNYSLTQPRY FCKSCRRYWT KGGTLRNIPV
101: GGGCRKNKRS TSSAARSLRT TPEPASHDGK VFSAAGFNGY SNNEHIDLSL AFALLNKQHP GSSSQLGFHS ELGSSHQSDM EGMFGTSQQK ENATYAFGNG
201: SSGLGDPSRV LWGFPWQMNG ESFGMMNIGG GGGHVDQIDS GREMWTNMNY INSGALM
101: GGGCRKNKRS TSSAARSLRT TPEPASHDGK VFSAAGFNGY SNNEHIDLSL AFALLNKQHP GSSSQLGFHS ELGSSHQSDM EGMFGTSQQK ENATYAFGNG
201: SSGLGDPSRV LWGFPWQMNG ESFGMMNIGG GGGHVDQIDS GREMWTNMNY INSGALM
Arabidopsis Description
DOF5.3Dof zinc finger protein DOF5.3 [Source:UniProtKB/Swiss-Prot;Acc:Q84TE9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.