Factsheet for Bra020261.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002458.1-P
Bra005398.1-P
Bra020236.1-P
Bra021926.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45610.1	Bra002458.1-P	AT5G60690.1	21245844
AT3G45610.1	Bra020236.1-P	AT5G60690.1	21245844
AT5G60200.1	Bra005398.1-P	AT2G34710.1	21245844
AT5G60200.1	Bra021926.1-P	AT2G34710.1	21245844
AT5G60200.1	Bra002458.1-P	AT5G60690.1	21245844
AT5G60200.1	Bra020236.1-P	AT5G60690.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09221	Canola	nucleus	99.16	91.47
Bra002504.1-P	Field mustard	nucleus	86.55	79.84
AT5G60200.1	Thale cress	nucleus	84.03	77.82
Bra006675.1-P	Field mustard	nucleus	84.45	72.56
AT3G45610.1	Thale cress	nucleus	69.75	67.76
Bra009587.1-P	Field mustard	nucleus	20.59	27.68
Bra035696.1-P	Field mustard	nucleus	29.41	27.34
PGSC0003DMT400058729	Potato	nucleus	21.43	25.89
Bra012804.1-P	Field mustard	nucleus	24.79	24.48
Bra017906.1-P	Field mustard	nucleus	25.63	24.11
Bra012277.1-P	Field mustard	nucleus	25.63	23.37
Bra006923.1-P	Field mustard	nucleus	23.53	23.14
Bra037401.1-P	Field mustard	nucleus	28.15	22.48
Bra035956.1-P	Field mustard	nucleus	24.79	22.1
KRH50082	Soybean	nucleus	26.47	21.88
Bra027722.1-P	Field mustard	nucleus	28.57	20.99
Bra010884.1-P	Field mustard	nucleus	25.63	20.68
Bra014418.1-P	Field mustard	nucleus	26.89	20.65
Bra013003.1-P	Field mustard	nucleus	25.21	20.41
GSMUA_Achr1P17670_001	Banana	nucleus	18.49	20.28
Bra032891.1-P	Field mustard	nucleus	25.21	20.2
Bra010136.1-P	Field mustard	nucleus	30.67	19.84
Bra030089.1-P	Field mustard	nucleus	24.79	19.8
Bra031853.1-P	Field mustard	nucleus	25.21	19.74
VIT_00s0652g00010.t01	Wine grape	nucleus	24.37	19.66
Bra024399.1-P	Field mustard	nucleus	25.21	19.61
Bra004525.1-P	Field mustard	nucleus	28.99	19.6
Bra000008.1-P	Field mustard	nucleus	23.95	19.45
Bra029352.1-P	Field mustard	nucleus	22.69	19.42
Bra035873.1-P	Field mustard	nucleus	27.73	19.41
Bra037822.1-P	Field mustard	nucleus	22.69	19.01
KRH20417	Soybean	nucleus	26.05	18.9
Solyc02g078620.1.1	Tomato	nucleus	22.27	18.66
Bra005181.1-P	Field mustard	nucleus	25.21	18.46
Bra017171.1-P	Field mustard	nucleus	23.95	18.45
Bra007156.1-P	Field mustard	nucleus	25.21	18.35
Zm00001d029512_P001	Maize	nucleus	26.89	18.23
Bra000429.1-P	Field mustard	nucleus	28.15	18.16
Bra013758.1-P	Field mustard	nucleus	25.63	18.15
Bra039272.1-P	Field mustard	nucleus, plastid	27.31	18.06
Bra019247.1-P	Field mustard	nucleus	25.63	17.78
Bra030696.1-P	Field mustard	nucleus	24.79	17.66
GSMUA_Achr5P12010_001	Banana	nucleus	26.05	17.46
Bra014752.1-P	Field mustard	nucleus	25.21	17.14
Bra035667.1-P	Field mustard	nucleus	23.95	16.57
Bra010548.1-P	Field mustard	nucleus	24.37	16.48
Bra031588.1-P	Field mustard	nucleus	20.17	15.14
Bra005725.1-P	Field mustard	nucleus	25.63	15.14
Bra028872.1-P	Field mustard	nucleus	24.37	14.29
TraesCS1B01G185700.1	Wheat	cytosol	7.14	7.83
TraesCS6A01G233700.1	Wheat	cytosol, mitochondrion, nucleus	6.72	7.37
Bra009588.1-P	Field mustard	plastid	4.62	6.18
HORVU2Hr1G047750.4	Barley	plastid	2.94	3.1
Os03t0276300-00	Rice	cytosol	1.26	2.16

Protein Annotations

MapMan:15.5.1.5	EnsemblPlantsGene:Bra020261	EnsemblPlants:Bra020261.1	EnsemblPlants:Bra020261.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	UniProt:M4DUR8	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	PANTHER:PTHR31992:SF78	UniParc:UPI0002543590	InterPro:Znf_Dof	SEG:seg	:

Description

AT5G60200 (E=2e-106) | Dof-type zinc finger domain-containing protein

Coordinates

chrA02:-:5902500..5903216

Molecular Weight (calculated)

25693.9 Da

IEP (calculated)

8.667

GRAVY (calculated)

-0.702

Length

238 amino acids

Sequence
(BLAST)

001: MGVPCSSNPT QLDHDQKKPS PATGAARPQP PELSLRCPRC DSTNTKFCYY NNYSLSQPRY FCKSCKRYWT KGGTLRNIPV GGGCRKNKRS TSSATRSLRT
101: TPEPASHDGK AFSAASFGGF GNNEHIDLSL AFALLNKQPP GSSSQLGFPS EFGSSHQSDM ESVFGTGQQK ENTGYVFGNG SSGLEMAMSD PNKVLWGFPW
201: QVNGEMNMGG GGGGHVDHID SGREIWTNMN YINSGALM

Best Arabidopsis Sequence Match ( AT5G60200.1 )
(BLAST)

001: MDHLLQHQDV FGNYNKAREA MGLSYSSNPT PLDNDQKKPS PATAVTRPQP PELALRCPRC DSTNTKFCYY NNYSLTQPRY FCKSCRRYWT KGGTLRNIPV
101: GGGCRKNKRS TSSAARSLRT TPEPASHDGK VFSAAGFNGY SNNEHIDLSL AFALLNKQHP GSSSQLGFHS ELGSSHQSDM EGMFGTSQQK ENATYAFGNG
201: SSGLGDPSRV LWGFPWQMNG ESFGMMNIGG GGGHVDQIDS GREMWTNMNY INSGALM

Arabidopsis Description

DOF5.3Dof zinc finger protein DOF5.3 [Source:UniProtKB/Swiss-Prot;Acc:Q84TE9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.