Factsheet for Bra007156.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40213	Canola	nucleus	88.69	81.69
Bra014752.1-P	Field mustard	nucleus	80.12	74.86
AT3G55370.3	Thale cress	nucleus	67.58	60.05
Bra009587.1-P	Field mustard	nucleus	22.02	40.68
VIT_13s0019g01410.t01	Wine grape	nucleus	41.59	40.36
GSMUA_Achr6P33410_001	Banana	nucleus	27.83	36.84
Bra005181.1-P	Field mustard	nucleus	33.95	34.15
Bra000008.1-P	Field mustard	nucleus	30.58	34.13
Bra017171.1-P	Field mustard	nucleus	31.5	33.33
Bra028872.1-P	Field mustard	nucleus	38.23	30.79
Bra005725.1-P	Field mustard	nucleus	37.0	30.02
Bra030696.1-P	Field mustard	nucleus	30.28	29.64
Bra035667.1-P	Field mustard	nucleus	30.28	28.78
Bra031588.1-P	Field mustard	nucleus	27.83	28.71
Bra020261.1-P	Field mustard	nucleus	18.35	25.21
Bra035956.1-P	Field mustard	nucleus	20.49	25.09
Bra032891.1-P	Field mustard	nucleus	22.32	24.58
Bra012804.1-P	Field mustard	nucleus	18.04	24.48
Bra002504.1-P	Field mustard	nucleus	19.27	24.42
Bra010884.1-P	Field mustard	nucleus	22.02	24.41
Bra037822.1-P	Field mustard	nucleus	21.1	24.3
Bra030089.1-P	Field mustard	nucleus	22.02	24.16
Bra006923.1-P	Field mustard	nucleus	17.74	23.97
Bra029352.1-P	Field mustard	nucleus	20.18	23.74
Bra013003.1-P	Field mustard	nucleus	20.49	22.79
Bra006675.1-P	Field mustard	nucleus	19.27	22.74
Bra035696.1-P	Field mustard	nucleus	17.74	22.66
Bra013758.1-P	Field mustard	nucleus	23.24	22.62
Bra031853.1-P	Field mustard	nucleus	20.8	22.37
Bra014418.1-P	Field mustard	nucleus	21.1	22.26
Bra004525.1-P	Field mustard	nucleus	23.85	22.16
Bra019247.1-P	Field mustard	nucleus	23.24	22.16
Bra024399.1-P	Field mustard	nucleus	20.18	21.57
Bra010548.1-P	Field mustard	nucleus	22.94	21.31
Bra039272.1-P	Field mustard	nucleus, plastid	22.94	20.83
Bra000429.1-P	Field mustard	nucleus	23.24	20.6
Bra037401.1-P	Field mustard	nucleus	18.65	20.47
Bra017906.1-P	Field mustard	nucleus	15.29	19.76
Bra027722.1-P	Field mustard	nucleus	19.57	19.75
Bra012277.1-P	Field mustard	nucleus	15.29	19.16
Bra035873.1-P	Field mustard	nucleus	19.88	19.12
Bra009588.1-P	Field mustard	plastid	9.79	17.98
Bra010136.1-P	Field mustard	nucleus	19.57	17.39

Protein Annotations

MapMan:15.5.1.5	EnsemblPlantsGene:Bra007156	EnsemblPlants:Bra007156.1	EnsemblPlants:Bra007156.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	UniProt:M4CSG4	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	PANTHER:PTHR31992:SF66	UniParc:UPI0002542A2F	InterPro:Znf_Dof	SEG:seg	:

Description

AT3G55370 (E=2e-071) OBP3 | OBP3 (OBF-BINDING PROTEIN 3); DNA binding / transcription factor

Coordinates

chrA09:+:27616355..27617338

Molecular Weight (calculated)

35698.4 Da

IEP (calculated)

9.502

GRAVY (calculated)

-0.729

Length

327 amino acids

Sequence
(BLAST)

001: MQQGNTQQLD RVTSDQNPLQ HFSSPPAAQA GSSQARVNSM VERARIAKIP LPEAALKCPR CESTNTKFCY FNNYNLTQPR HFCKTCRRYW TRGGALRNVP
101: VGGGFRRNKR NKPNGGGRSK ATVAVSADNN NTTSLLSCHP SYSNPSKFLS YGQMPGFNSN LPILPPFQSL GDYISSNIGL DWSSSGGIVD PWRIPSLQQA
201: QQFPFLINAK GLEQPSTVMY PSLEGNEGVS YANPQKEGSD YSSQLRSKPL MDMASSGDQT AQARNVKAEE NDQGGNGLNN FSRNFLGNIN IKPVEENDGY
301: TSWGGSSNIS SSWTGFSSNN STGHLSF

Best Arabidopsis Sequence Match ( AT3G55370.2 )
(BLAST)

001: MVFSSLPVNQ FDSQNWQQQG NQHQLECVTT DQNPNNYLRQ LSSPPTSQVA GSSQARVNSM VERARIAKVP LPEAALNCPR CDSTNTKFCY FNNYSLTQPR
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGKGGVNQG DSQQKSSDYS NQLMFKPLMD FSSGGVSATQ TRNVKAEEND
301: QDRGRDGDGV NNLSRNFLGN ININSGRNEE YTSWGGNSSW TGFTSNNSTG HLSF

Arabidopsis Description

OBP3OBF-binding protein 3 [Source:UniProtKB/TrEMBL;Acc:F4IWU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.