Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 5
- plastid 1
- mitochondrion 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX90142 | Canola | nucleus | 97.63 | 91.14 |
CDY35729 | Canola | nucleus | 91.19 | 89.97 |
Bra030089.1-P | Field mustard | nucleus | 81.36 | 80.54 |
Bra032891.1-P | Field mustard | nucleus | 80.68 | 80.13 |
AT1G28310.2 | Thale cress | nucleus | 86.1 | 75.82 |
Bra009587.1-P | Field mustard | nucleus | 16.61 | 27.68 |
Bra020261.1-P | Field mustard | nucleus | 20.68 | 25.63 |
Bra002504.1-P | Field mustard | nucleus | 21.36 | 24.42 |
Bra037822.1-P | Field mustard | nucleus | 22.03 | 22.89 |
Bra030696.1-P | Field mustard | nucleus | 25.76 | 22.75 |
KRH10907 | Soybean | nucleus | 26.78 | 22.38 |
Bra031853.1-P | Field mustard | nucleus | 23.05 | 22.37 |
VIT_10s0003g00040.t01 | Wine grape | nucleus | 23.05 | 22.08 |
Bra006675.1-P | Field mustard | nucleus | 20.68 | 22.02 |
Bra007156.1-P | Field mustard | nucleus | 24.41 | 22.02 |
Bra012804.1-P | Field mustard | nucleus | 17.97 | 21.99 |
Bra024399.1-P | Field mustard | nucleus | 22.71 | 21.9 |
Bra000008.1-P | Field mustard | nucleus | 21.69 | 21.84 |
Bra035956.1-P | Field mustard | nucleus | 19.32 | 21.35 |
Bra035696.1-P | Field mustard | nucleus | 18.31 | 21.09 |
Bra006923.1-P | Field mustard | nucleus | 17.29 | 21.07 |
KRH21402 | Soybean | nucleus | 25.42 | 21.01 |
Bra014418.1-P | Field mustard | nucleus | 22.03 | 20.97 |
Bra012277.1-P | Field mustard | nucleus | 18.31 | 20.69 |
Bra014752.1-P | Field mustard | nucleus | 24.41 | 20.57 |
Bra017906.1-P | Field mustard | nucleus | 17.63 | 20.55 |
Bra029352.1-P | Field mustard | nucleus | 19.32 | 20.5 |
Bra037401.1-P | Field mustard | nucleus | 20.68 | 20.47 |
Bra004525.1-P | Field mustard | nucleus | 24.41 | 20.45 |
Bra035667.1-P | Field mustard | nucleus | 23.73 | 20.35 |
Bra013003.1-P | Field mustard | nucleus | 20.0 | 20.07 |
Bra005181.1-P | Field mustard | nucleus | 22.03 | 20.0 |
Bra000429.1-P | Field mustard | nucleus | 24.75 | 19.78 |
Bra017171.1-P | Field mustard | nucleus | 20.68 | 19.74 |
Bra039272.1-P | Field mustard | nucleus, plastid | 24.07 | 19.72 |
Bra031588.1-P | Field mustard | nucleus | 21.02 | 19.56 |
EER97271 | Sorghum | nucleus | 23.39 | 19.49 |
Bra027722.1-P | Field mustard | nucleus | 21.36 | 19.44 |
Zm00001d021591_P001 | Maize | nucleus | 23.05 | 18.89 |
GSMUA_Achr10P... | Banana | nucleus | 22.03 | 18.68 |
PGSC0003DMT400076447 | Potato | nucleus | 24.75 | 18.34 |
TraesCS2B01G249200.1 | Wheat | nucleus, plastid | 22.03 | 18.31 |
TraesCS2A01G225900.1 | Wheat | nucleus, plastid | 22.03 | 18.26 |
TraesCS2D01G231600.1 | Wheat | nucleus | 22.03 | 18.26 |
Solyc02g077950.1.1 | Tomato | nucleus | 23.39 | 18.21 |
Zm00001d006463_P001 | Maize | plastid | 21.02 | 17.66 |
Bra013758.1-P | Field mustard | nucleus | 20.0 | 17.56 |
Bra019247.1-P | Field mustard | nucleus | 20.0 | 17.2 |
Bra010136.1-P | Field mustard | nucleus | 21.02 | 16.85 |
Bra035873.1-P | Field mustard | nucleus | 19.32 | 16.76 |
Bra010548.1-P | Field mustard | nucleus | 19.66 | 16.48 |
Bra005725.1-P | Field mustard | nucleus | 22.03 | 16.13 |
Bra028872.1-P | Field mustard | nucleus | 21.69 | 15.76 |
Bra009588.1-P | Field mustard | plastid | 5.08 | 8.43 |
Protein Annotations
MapMan:15.5.1.5 | EnsemblPlantsGene:Bra010884 | EnsemblPlants:Bra010884.1 | EnsemblPlants:Bra010884.1-P | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
InterPro:IPR003851 | UniProt:M4D331 | PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 |
PANTHER:PTHR31992 | PANTHER:PTHR31992:SF79 | UniParc:UPI00025456B4 | InterPro:Znf_Dof | SEG:seg | : |
Description
AT1G28310 (E=3e-088) | Dof-type zinc finger domain-containing protein
Coordinates
chrA08:+:16948109..16948996
Molecular Weight (calculated)
31866.1 Da
IEP (calculated)
9.195
GRAVY (calculated)
-0.546
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MIVAPSHQQQ QQQPPQLKCP RCDSSNTKFC YYNNYSLSQP RYFCKACKRY WTQGGTLRNV PVGGSYRKNK RVKRPATTTV ASTASTTTSS SPNNPHHQIS
101: QFSSVNHHPL LYGLSDHVSS CNNLPMMVPS RFSDSSKTSS SSGLESEFIS SGYSGLGALG LGLPHYLTHD HTINGSFINN STTNKPFLLS GLVGSSVSSS
201: SSTLLQHPHK TINNGGEMMG QSHIRTLAPL PHVGGNTDDM NKEGKLDQIS GNINGFMSSS SLNPSNYNNI WNNASVVNGA CLDLTNNDVG SFLTS
101: QFSSVNHHPL LYGLSDHVSS CNNLPMMVPS RFSDSSKTSS SSGLESEFIS SGYSGLGALG LGLPHYLTHD HTINGSFINN STTNKPFLLS GLVGSSVSSS
201: SSTLLQHPHK TINNGGEMMG QSHIRTLAPL PHVGGNTDDM NKEGKLDQIS GNINGFMSSS SLNPSNYNNI WNNASVVNGA CLDLTNNDVG SFLTS
001: MQSKNMIVAS SHQQQQQQQP QQPQPQLKCP RCDSSNTKFC YYNNYSLSQP RHFCKACKRY WTRGGTLRNV PVGGSYRKNK RVKRPSTATT TTASTVSTTN
101: SSSPNNPHQI SHFSSMNHHP LFYGLSDHMS SCNNNLPMIP SRFSDSSKTC SSSGLESEFL SSGFSSLSAL GLGLPHQMSH DHTINGSFIN NSTTNKPFLL
201: SGLFGSSMSS SSTLLQHPHK PMNNGGDMLG QSHLQTLASL QDLHVGGNNE DMKYKEGKLD QISGNINGFM SSSSSLDPSN YNNMWNNASV VNGAWLDPTN
301: NNVGSSLTSL I
101: SSSPNNPHQI SHFSSMNHHP LFYGLSDHMS SCNNNLPMIP SRFSDSSKTC SSSGLESEFL SSGFSSLSAL GLGLPHQMSH DHTINGSFIN NSTTNKPFLL
201: SGLFGSSMSS SSTLLQHPHK PMNNGGDMLG QSHLQTLASL QDLHVGGNNE DMKYKEGKLD QISGNINGFM SSSSSLDPSN YNNMWNNASV VNGAWLDPTN
301: NNVGSSLTSL I
Arabidopsis Description
Dof-type zinc finger DNA-binding family protein [Source:TAIR;Acc:AT1G28310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.