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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • nucleus 5
  • plastid 1
  • mitochondrion 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX90142 Canola nucleus 97.63 91.14
CDY35729 Canola nucleus 91.19 89.97
Bra030089.1-P Field mustard nucleus 81.36 80.54
Bra032891.1-P Field mustard nucleus 80.68 80.13
AT1G28310.2 Thale cress nucleus 86.1 75.82
Bra009587.1-P Field mustard nucleus 16.61 27.68
Bra020261.1-P Field mustard nucleus 20.68 25.63
Bra002504.1-P Field mustard nucleus 21.36 24.42
Bra037822.1-P Field mustard nucleus 22.03 22.89
Bra030696.1-P Field mustard nucleus 25.76 22.75
KRH10907 Soybean nucleus 26.78 22.38
Bra031853.1-P Field mustard nucleus 23.05 22.37
VIT_10s0003g00040.t01 Wine grape nucleus 23.05 22.08
Bra006675.1-P Field mustard nucleus 20.68 22.02
Bra007156.1-P Field mustard nucleus 24.41 22.02
Bra012804.1-P Field mustard nucleus 17.97 21.99
Bra024399.1-P Field mustard nucleus 22.71 21.9
Bra000008.1-P Field mustard nucleus 21.69 21.84
Bra035956.1-P Field mustard nucleus 19.32 21.35
Bra035696.1-P Field mustard nucleus 18.31 21.09
Bra006923.1-P Field mustard nucleus 17.29 21.07
KRH21402 Soybean nucleus 25.42 21.01
Bra014418.1-P Field mustard nucleus 22.03 20.97
Bra012277.1-P Field mustard nucleus 18.31 20.69
Bra014752.1-P Field mustard nucleus 24.41 20.57
Bra017906.1-P Field mustard nucleus 17.63 20.55
Bra029352.1-P Field mustard nucleus 19.32 20.5
Bra037401.1-P Field mustard nucleus 20.68 20.47
Bra004525.1-P Field mustard nucleus 24.41 20.45
Bra035667.1-P Field mustard nucleus 23.73 20.35
Bra013003.1-P Field mustard nucleus 20.0 20.07
Bra005181.1-P Field mustard nucleus 22.03 20.0
Bra000429.1-P Field mustard nucleus 24.75 19.78
Bra017171.1-P Field mustard nucleus 20.68 19.74
Bra039272.1-P Field mustard nucleus, plastid 24.07 19.72
Bra031588.1-P Field mustard nucleus 21.02 19.56
EER97271 Sorghum nucleus 23.39 19.49
Bra027722.1-P Field mustard nucleus 21.36 19.44
Zm00001d021591_P001 Maize nucleus 23.05 18.89
GSMUA_Achr10P... Banana nucleus 22.03 18.68
PGSC0003DMT400076447 Potato nucleus 24.75 18.34
TraesCS2B01G249200.1 Wheat nucleus, plastid 22.03 18.31
TraesCS2A01G225900.1 Wheat nucleus, plastid 22.03 18.26
TraesCS2D01G231600.1 Wheat nucleus 22.03 18.26
Solyc02g077950.1.1 Tomato nucleus 23.39 18.21
Zm00001d006463_P001 Maize plastid 21.02 17.66
Bra013758.1-P Field mustard nucleus 20.0 17.56
Bra019247.1-P Field mustard nucleus 20.0 17.2
Bra010136.1-P Field mustard nucleus 21.02 16.85
Bra035873.1-P Field mustard nucleus 19.32 16.76
Bra010548.1-P Field mustard nucleus 19.66 16.48
Bra005725.1-P Field mustard nucleus 22.03 16.13
Bra028872.1-P Field mustard nucleus 21.69 15.76
Bra009588.1-P Field mustard plastid 5.08 8.43
Protein Annotations
MapMan:15.5.1.5EnsemblPlantsGene:Bra010884EnsemblPlants:Bra010884.1EnsemblPlants:Bra010884.1-PGO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
InterPro:IPR003851UniProt:M4D331PFAM:PD007478PFAM:PF02701ScanProsite:PS01361PFscan:PS50884
PANTHER:PTHR31992PANTHER:PTHR31992:SF79UniParc:UPI00025456B4InterPro:Znf_DofSEG:seg:
Description
AT1G28310 (E=3e-088) | Dof-type zinc finger domain-containing protein
Coordinates
chrA08:+:16948109..16948996
Molecular Weight (calculated)
31866.1 Da
IEP (calculated)
9.195
GRAVY (calculated)
-0.546
Length
295 amino acids
Sequence
(BLAST)
001: MIVAPSHQQQ QQQPPQLKCP RCDSSNTKFC YYNNYSLSQP RYFCKACKRY WTQGGTLRNV PVGGSYRKNK RVKRPATTTV ASTASTTTSS SPNNPHHQIS
101: QFSSVNHHPL LYGLSDHVSS CNNLPMMVPS RFSDSSKTSS SSGLESEFIS SGYSGLGALG LGLPHYLTHD HTINGSFINN STTNKPFLLS GLVGSSVSSS
201: SSTLLQHPHK TINNGGEMMG QSHIRTLAPL PHVGGNTDDM NKEGKLDQIS GNINGFMSSS SLNPSNYNNI WNNASVVNGA CLDLTNNDVG SFLTS
Best Arabidopsis Sequence Match ( AT1G28310.1 )
(BLAST)
001: MQSKNMIVAS SHQQQQQQQP QQPQPQLKCP RCDSSNTKFC YYNNYSLSQP RHFCKACKRY WTRGGTLRNV PVGGSYRKNK RVKRPSTATT TTASTVSTTN
101: SSSPNNPHQI SHFSSMNHHP LFYGLSDHMS SCNNNLPMIP SRFSDSSKTC SSSGLESEFL SSGFSSLSAL GLGLPHQMSH DHTINGSFIN NSTTNKPFLL
201: SGLFGSSMSS SSTLLQHPHK PMNNGGDMLG QSHLQTLASL QDLHVGGNNE DMKYKEGKLD QISGNINGFM SSSSSLDPSN YNNMWNNASV VNGAWLDPTN
301: NNVGSSLTSL I
Arabidopsis Description
Dof-type zinc finger DNA-binding family protein [Source:TAIR;Acc:AT1G28310]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.