Factsheet for TraesCS2B01G249200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G231600.1	Wheat	nucleus	96.9	96.63
TraesCS2A01G225900.1	Wheat	nucleus, plastid	96.34	96.07
EER97271	Sorghum	nucleus	69.86	70.06
Zm00001d021591_P001	Maize	nucleus	70.42	69.44
Zm00001d006463_P001	Maize	plastid	66.2	66.95
TraesCS2B01G094000.1	Wheat	nucleus	29.86	32.12
TraesCS5B01G087600.3	Wheat	nucleus	26.48	27.33
TraesCS4B01G206800.1	Wheat	nucleus	26.76	25.13
VIT_10s0003g00040.t01	Wine grape	nucleus	21.41	24.68
CDY72049	Canola	nucleus	20.28	24.24
CDY70666	Canola	nucleus	20.0	23.91
Bra032891.1-P	Field mustard	nucleus	19.72	23.57
GSMUA_Achr9P11530_001	Banana	nucleus, plastid	23.94	23.48
Bra030089.1-P	Field mustard	nucleus	19.44	23.15
Bra010884.1-P	Field mustard	nucleus	18.31	22.03
AT1G28310.2	Thale cress	nucleus	20.56	21.79
TraesCS6B01G317100.1	Wheat	nucleus	17.46	21.45
CDY66590	Canola	nucleus	19.72	21.41
CDY15678	Canola	nucleus	19.44	21.1
CDY35729	Canola	nucleus	17.46	20.74
KRH21402	Soybean	nucleus	20.85	20.73
TraesCS1B01G045000.3	Wheat	nucleus	21.41	20.71
KRH10907	Soybean	nucleus	20.56	20.68
CDX90142	Canola	nucleus	18.31	20.57
TraesCS7B01G120600.1	Wheat	nucleus	18.31	20.38
TraesCS6B01G301500.1	Wheat	nucleus	17.46	20.26
KRH50083	Soybean	nucleus	19.72	20.11
KRH20416	Soybean	nucleus	20.0	20.11
Solyc02g077950.1.1	Tomato	nucleus	21.41	20.05
PGSC0003DMT400076447	Potato	nucleus	21.97	19.6
TraesCS3B01G608900.1	Wheat	nucleus	19.44	19.44
TraesCS2B01G420400.1	Wheat	nucleus	20.56	19.41
TraesCS1B01G284300.1	Wheat	nucleus	16.9	18.99
TraesCS3B01G609100.1	Wheat	nucleus	18.31	18.73
TraesCS3B01G609000.1	Wheat	nucleus	18.31	18.47
TraesCS5B01G492600.1	Wheat	nucleus	23.38	18.36
TraesCS5B01G154100.1	Wheat	nucleus	17.46	18.34
TraesCS3B01G608800.1	Wheat	nucleus	19.15	18.09
TraesCS5B01G406500.1	Wheat	nucleus	19.15	17.8
TraesCS3B01G409600.1	Wheat	nucleus	16.06	17.22
TraesCS6B01G270100.1	Wheat	nucleus	18.59	16.97
TraesCS1B01G185700.1	Wheat	cytosol	5.63	9.22

Protein Annotations

EnsemblPlants:TraesCS2B01G249200.1	EnsemblPlantsGene:TraesCS2B01G249200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	InterPro:Znf_Dof	PANTHER:PTHR31992	PANTHER:PTHR31992:SF63	PFAM:PD007478	PFAM:PF02701
PFscan:PS50884	ScanProsite:PS01361	SEG:seg	MapMan:15.5.1.5	:	:

Description

No Description!

Coordinates

chr2B:-:257523313..257524380

Molecular Weight (calculated)

35681.3 Da

IEP (calculated)

7.863

GRAVY (calculated)

-0.262

Length

355 amino acids

Sequence
(BLAST)

001: MAGAGGGAAA AAAAAVQPAA AAGAGRSSSS SAGGGGTGGA VADPRAEALR CPRCDSANTK FCYYNNYSLS QPRHFCKACK RYWTRGGTLR NVPVGGGCRK
101: NKRSRSSNGS GGRPGSCAVV ASTNAAAGGI TSSTSMSLPP PGSLSSALGL HGHGSSSLAS LLLGSGASGG DHLGLFHAMQ SVVSDATAYE MHQQHQTQVD
201: QLLGLGYGAG DANGSQIHIK PWQQHLQDGA GGLFDGFYAP LLSGSIVPGL EELHVKAEAT AGEHHHHHHQ KKATDGDQQS WDQHPTSSSN VEANIMASDA
301: LMAAAAAASM NPAVSNAATA PTSSPLMYWG NGNIGGSPAA WPDMANCGSS IATFF

Best Arabidopsis Sequence Match ( AT5G60200.1 )
(BLAST)

001: MDHLLQHQDV FGNYNKAREA MGLSYSSNPT PLDNDQKKPS PATAVTRPQP PELALRCPRC DSTNTKFCYY NNYSLTQPRY FCKSCRRYWT KGGTLRNIPV
101: GGGCRKNKRS TSSAARSLRT TPEPASHDGK VFSAAGFNGY SNNEHIDLSL AFALLNKQHP GSSSQLGFHS ELGSSHQSDM EGMFGTSQQK ENATYAFGNG
201: SSGLGDPSRV LWGFPWQMNG ESFGMMNIGG GGGHVDQIDS GREMWTNMNY INSGALM

Arabidopsis Description

DOF5.3Dof zinc finger protein DOF5.3 [Source:UniProtKB/Swiss-Prot;Acc:Q84TE9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.