Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH50083 | Soybean | nucleus | 32.14 | 28.45 |
| VIT_06s0004g04520.t01 | Wine grape | nucleus | 28.57 | 27.5 |
| KRH20416 | Soybean | nucleus | 30.84 | 26.91 |
| VIT_13s0019g01410.t01 | Wine grape | nucleus | 29.22 | 26.71 |
| VIT_00s0218g00040.t01 | Wine grape | nucleus | 29.22 | 26.63 |
| PGSC0003DMT400076447 | Potato | nucleus | 33.77 | 26.13 |
| CDY72049 | Canola | nucleus | 25.0 | 25.93 |
| Bra030089.1-P | Field mustard | nucleus | 25.0 | 25.84 |
| Solyc02g077950.1.1 | Tomato | nucleus | 31.49 | 25.59 |
| Bra032891.1-P | Field mustard | nucleus | 24.68 | 25.59 |
| CDY70666 | Canola | nucleus | 24.68 | 25.59 |
| VIT_16s0098g01420.t01 | Wine grape | nucleus | 23.05 | 24.74 |
| VIT_08s0007g00180.t01 | Wine grape | nucleus | 27.6 | 24.64 |
| VIT_02s0025g02250.t01 | Wine grape | nucleus | 22.4 | 23.96 |
| VIT_06s0004g03420.t01 | Wine grape | nucleus | 22.73 | 23.65 |
| CDY66590 | Canola | nucleus | 25.0 | 23.55 |
| CDY15678 | Canola | nucleus | 25.0 | 23.55 |
| AT1G28310.2 | Thale cress | nucleus | 25.32 | 23.28 |
| VIT_00s0652g00010.t01 | Wine grape | nucleus | 22.08 | 23.05 |
| Bra010884.1-P | Field mustard | nucleus | 22.08 | 23.05 |
| EER97271 | Sorghum | nucleus | 26.3 | 22.88 |
| CDX90142 | Canola | nucleus | 23.05 | 22.47 |
| CDY35729 | Canola | nucleus | 21.75 | 22.41 |
| VIT_17s0000g08290.t01 | Wine grape | nucleus | 22.08 | 22.08 |
| VIT_10s0003g00030.t01 | Wine grape | nucleus | 21.43 | 22.07 |
| VIT_08s0105g00170.t01 | Wine grape | nucleus | 19.16 | 21.85 |
| Zm00001d021591_P001 | Maize | nucleus | 25.32 | 21.67 |
| GSMUA_Achr10P... | Banana | nucleus | 24.35 | 21.55 |
| TraesCS2B01G249200.1 | Wheat | nucleus, plastid | 24.68 | 21.41 |
| VIT_17s0000g04850.t01 | Wine grape | nucleus | 22.08 | 21.38 |
| TraesCS2A01G225900.1 | Wheat | nucleus, plastid | 24.68 | 21.35 |
| TraesCS2D01G231600.1 | Wheat | nucleus | 24.35 | 21.07 |
| VIT_15s0046g00150.t01 | Wine grape | nucleus | 21.1 | 20.57 |
| VIT_18s0001g15730.t01 | Wine grape | nucleus | 18.51 | 20.28 |
| Zm00001d006463_P001 | Maize | plastid | 23.05 | 20.23 |
| VIT_00s0253g00060.t01 | Wine grape | nucleus | 19.48 | 17.05 |
Protein Annotations
| MapMan:15.5.1.5 | ProteinID:CCB55613 | ProteinID:CCB55613.1 | UniProt:F6HM25 | EMBL:FN595992 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR003851 | PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 |
| PANTHER:PTHR31992 | PANTHER:PTHR31992:SF79 | UniParc:UPI0002109B66 | ArrayExpress:VIT_10s0003g00040 | EnsemblPlantsGene:VIT_10s0003g00040 | EnsemblPlants:VIT_10s0003g00040.t01 |
| unigene:Vvi.21727 | InterPro:Znf_Dof | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr10:-:1335706..1337565
Molecular Weight (calculated)
33553.2 Da
IEP (calculated)
8.379
GRAVY (calculated)
-0.550
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGNCEKMVV ISSTTNDWPE NQIDDKGLMA STGRVMEKPG QEQQALKCPR CDSSNTKFCY YNNYSLSQPR HFCKACKRYW TRGGTLRNVP VGGGCRKNKR
101: VKRPASSVDA PSSAPTAALN PPPPSQIDLS ASSNHVTPLF YGLPSNPSEL NLPFPRFNSR ASNEDTVSGY DLQPQLGALG LGFSSGIIAN DTRTDDYRNG
201: FNPAKQIQDL VTSSSLLSNY SIFGSSSSTT TPTMASLINS SLQQQKFMNG DLKESRGANH FQPLWNSVPC QNQIEQIGSS DPSLYWNLTS LGAWSDLPNM
301: GSSVTSLI
101: VKRPASSVDA PSSAPTAALN PPPPSQIDLS ASSNHVTPLF YGLPSNPSEL NLPFPRFNSR ASNEDTVSGY DLQPQLGALG LGFSSGIIAN DTRTDDYRNG
201: FNPAKQIQDL VTSSSLLSNY SIFGSSSSTT TPTMASLINS SLQQQKFMNG DLKESRGANH FQPLWNSVPC QNQIEQIGSS DPSLYWNLTS LGAWSDLPNM
301: GSSVTSLI
001: MFGNCDQNKK MPIISSPNTN PLASMQSKNM IVASSHQQQQ QQQPQQPQPQ LKCPRCDSSN TKFCYYNNYS LSQPRHFCKA CKRYWTRGGT LRNVPVGGSY
101: RKNKRVKRPS TATTTTASTV STTNSSSPNN PHQISHFSSM NHHPLFYGLS DHMSSCNNNL PMIPSRFSDS SKTCSSSGLE SEFLSSGFSS LSALGLGLPH
201: QMSHDHTING SFINNSTTNK PFLLSGLFGS SMSSSSTLLQ HPHKPMNNGG DMLGQSHLQT LASLQDLHVG GNNEDMKYKE GKLDQISGNI NGFMSSSSSL
301: DPSNYNNMWN NASVVNGAWL DPTNNNVGSS LTSLI
101: RKNKRVKRPS TATTTTASTV STTNSSSPNN PHQISHFSSM NHHPLFYGLS DHMSSCNNNL PMIPSRFSDS SKTCSSSGLE SEFLSSGFSS LSALGLGLPH
201: QMSHDHTING SFINNSTTNK PFLLSGLFGS SMSSSSTLLQ HPHKPMNNGG DMLGQSHLQT LASLQDLHVG GNNEDMKYKE GKLDQISGNI NGFMSSSSSL
301: DPSNYNNMWN NASVVNGAWL DPTNNNVGSS LTSLI
Arabidopsis Description
Dof-type zinc finger DNA-binding family protein [Source:TAIR;Acc:AT1G28310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.