Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030089.1-P | Field mustard | nucleus | 78.51 | 88.25 |
| CDY66590 | Canola | nucleus | 85.37 | 87.46 |
| CDY15678 | Canola | nucleus | 85.37 | 87.46 |
| CDY70666 | Canola | nucleus | 77.31 | 87.21 |
| Bra032891.1-P | Field mustard | nucleus | 77.01 | 86.87 |
| CDX90142 | Canola | nucleus | 81.49 | 86.39 |
| CDY72049 | Canola | nucleus | 76.42 | 86.2 |
| Bra010884.1-P | Field mustard | nucleus | 75.82 | 86.1 |
| CDY35729 | Canola | nucleus | 72.84 | 81.61 |
| VIT_10s0003g00040.t01 | Wine grape | nucleus | 23.28 | 25.32 |
| AT5G60200.1 | Thale cress | nucleus | 19.4 | 25.29 |
| KRH10907 | Soybean | nucleus | 26.27 | 24.93 |
| AT3G45610.1 | Thale cress | nucleus | 17.31 | 23.67 |
| KRH21402 | Soybean | nucleus | 25.07 | 23.53 |
| AT3G55370.3 | Thale cress | nucleus | 24.78 | 22.55 |
| AT5G65590.1 | Thale cress | nucleus | 20.9 | 22.15 |
| AT4G00940.2 | Thale cress | nucleus | 19.4 | 22.11 |
| AT3G61850.4 | Thale cress | nucleus | 21.19 | 21.91 |
| AT2G28810.1 | Thale cress | nucleus | 22.09 | 21.76 |
| AT5G60850.1 | Thale cress | nucleus | 19.7 | 21.5 |
| AT3G52440.2 | Thale cress | nucleus | 17.01 | 21.43 |
| AT1G07640.3 | Thale cress | nucleus | 21.19 | 20.94 |
| AT2G37590.1 | Thale cress | nucleus | 20.6 | 20.91 |
| EER97271 | Sorghum | nucleus | 22.09 | 20.9 |
| TraesCS2B01G249200.1 | Wheat | nucleus, plastid | 21.79 | 20.56 |
| TraesCS2A01G225900.1 | Wheat | nucleus, plastid | 21.79 | 20.51 |
| TraesCS2D01G231600.1 | Wheat | nucleus | 21.79 | 20.51 |
| PGSC0003DMT400076447 | Potato | nucleus | 24.18 | 20.35 |
| AT2G46590.2 | Thale cress | nucleus | 22.39 | 20.33 |
| Zm00001d021591_P001 | Maize | nucleus | 21.79 | 20.28 |
| GSMUA_Achr10P... | Banana | nucleus | 20.9 | 20.11 |
| Solyc02g077950.1.1 | Tomato | nucleus | 22.39 | 19.79 |
| AT1G21340.1 | Thale cress | nucleus | 15.22 | 19.62 |
| AT2G28510.1 | Thale cress | nucleus | 16.72 | 19.44 |
| Zm00001d006463_P001 | Maize | plastid | 20.0 | 19.09 |
| AT1G64620.1 | Thale cress | nucleus | 19.7 | 18.75 |
| AT5G02460.1 | Thale cress | nucleus | 21.49 | 18.05 |
| AT4G24060.1 | Thale cress | nucleus | 17.61 | 17.25 |
| AT5G62940.1 | Thale cress | nucleus | 18.21 | 16.4 |
Protein Annotations
| MapMan:15.5.1.5 | EntrezGene:839725 | UniProt:A0A178W100 | ProteinID:AEE30951.2 | ArrayExpress:AT1G28310 | EnsemblPlantsGene:AT1G28310 |
| RefSeq:AT1G28310 | TAIR:AT1G28310 | RefSeq:AT1G28310-TAIR-G | EnsemblPlants:AT1G28310.2 | TAIR:AT1G28310.2 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003851 | RefSeq:NP_001031100.2 | ProteinID:OAP11776.1 | PFAM:PD007478 |
| PFAM:PF02701 | PO:PO:0000293 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF79 |
| UniProt:Q2V4K7 | UniParc:UPI0000162EF7 | InterPro:Znf_Dof | SEG:seg | : | : |
Description
Dof-type zinc finger DNA-binding family protein [Source:TAIR;Acc:AT1G28310]
Coordinates
chr1:-:9912534..9913827
Molecular Weight (calculated)
36612.7 Da
IEP (calculated)
9.416
GRAVY (calculated)
-0.690
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MFGNCDQNKK MPIISSPNTN PLASMQSKNM IVASSHQQQQ QQQPQQPQPQ LKCPRCDSSN TKFCYYNNYS LSQPRHFCKA CKRYWTRGGT LRNVPVGGSY
101: RKNKRVKRPS TATTTTASTV STTNSSSPNN PHQISHFSSM NHHPLFYGLS DHMSSCNNNL PMIPSRFSDS SKTCSSSGLE SEFLSSGFSS LSALGLGLPH
201: QMSHDHTING SFINNSTTNK PFLLSGLFGS SMSSSSTLLQ HPHKPMNNGG DMLGQSHLQT LASLQDLHVG GNNEDMKYKE GKLDQISGNI NGFMSSSSSL
301: DPSNYNNMWN NASVVNGAWL DPTNNNVGSS LTSLI
101: RKNKRVKRPS TATTTTASTV STTNSSSPNN PHQISHFSSM NHHPLFYGLS DHMSSCNNNL PMIPSRFSDS SKTCSSSGLE SEFLSSGFSS LSALGLGLPH
201: QMSHDHTING SFINNSTTNK PFLLSGLFGS SMSSSSTLLQ HPHKPMNNGG DMLGQSHLQT LASLQDLHVG GNNEDMKYKE GKLDQISGNI NGFMSSSSSL
301: DPSNYNNMWN NASVVNGAWL DPTNNNVGSS LTSLI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.