Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16754 | Canola | nucleus | 81.18 | 88.82 |
| Bra035873.1-P | Field mustard | nucleus | 80.38 | 87.94 |
| CDX87270 | Canola | nucleus | 80.11 | 87.39 |
| CDY00341 | Canola | nucleus | 85.75 | 86.68 |
| CDX84369 | Canola | nucleus | 85.75 | 85.98 |
| Bra010136.1-P | Field mustard | nucleus | 84.41 | 85.33 |
| VIT_17s0000g08290.t01 | Wine grape | nucleus | 44.89 | 54.22 |
| PGSC0003DMT400069680 | Potato | nucleus | 40.59 | 53.93 |
| Solyc06g071480.2.1 | Tomato | nucleus | 40.32 | 53.76 |
| KRH63537 | Soybean | nucleus | 46.24 | 50.0 |
| GSMUA_Achr10P... | Banana | nucleus | 29.84 | 43.02 |
| Zm00001d017788_P001 | Maize | nucleus | 30.91 | 39.93 |
| EES05649 | Sorghum | nucleus | 31.18 | 39.32 |
| Zm00001d051577_P001 | Maize | nucleus | 30.38 | 38.05 |
| GSMUA_Achr2P23020_001 | Banana | nucleus | 27.96 | 37.82 |
| Os02t0707200-00 | Rice | nucleus | 27.15 | 35.07 |
| TraesCS6D01G254200.1 | Wheat | nucleus | 28.76 | 34.97 |
| TraesCS6B01G301500.1 | Wheat | nucleus | 28.49 | 34.64 |
| TraesCS6A01G274000.1 | Wheat | nucleus | 28.49 | 34.64 |
| AT4G00940.2 | Thale cress | nucleus | 23.12 | 29.25 |
| AT3G61850.4 | Thale cress | nucleus | 25.27 | 29.01 |
| AT5G60200.1 | Thale cress | nucleus | 18.55 | 26.85 |
| AT3G45610.1 | Thale cress | nucleus | 17.2 | 26.12 |
| GSMUA_Achr1P20550_001 | Banana | nucleus | 18.82 | 25.93 |
| AT2G46590.2 | Thale cress | nucleus | 25.0 | 25.2 |
| AT4G24060.1 | Thale cress | nucleus | 23.12 | 25.15 |
| AT1G64620.1 | Thale cress | nucleus | 23.39 | 24.72 |
| AT5G60850.1 | Thale cress | nucleus | 19.62 | 23.78 |
| AT1G21340.1 | Thale cress | nucleus | 16.4 | 23.46 |
| AT2G28510.1 | Thale cress | nucleus | 17.74 | 22.92 |
| AT2G37590.1 | Thale cress | nucleus | 19.89 | 22.42 |
| AT3G52440.2 | Thale cress | nucleus | 15.32 | 21.43 |
| AT2G28810.1 | Thale cress | nucleus | 18.55 | 20.29 |
| AT5G65590.1 | Thale cress | nucleus | 16.67 | 19.62 |
| AT3G55370.3 | Thale cress | nucleus | 19.09 | 19.29 |
| AT1G07640.3 | Thale cress | nucleus | 17.2 | 18.88 |
| AT1G28310.2 | Thale cress | nucleus | 16.4 | 18.21 |
| AT5G02460.1 | Thale cress | nucleus | 17.74 | 16.54 |
Protein Annotations
| MapMan:15.5.1.5 | EntrezGene:836414 | UniProt:A0A178UF22 | ProteinID:AED97676.1 | ArrayExpress:AT5G62940 | EnsemblPlantsGene:AT5G62940 |
| RefSeq:AT5G62940 | TAIR:AT5G62940 | RefSeq:AT5G62940-TAIR-G | EnsemblPlants:AT5G62940.1 | TAIR:AT5G62940.1 | Unigene:At.29026 |
| ProteinID:BAB10863.1 | EMBL:BT020467 | EMBL:BT020576 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010067 |
| GO:GO:0010087 | GO:GO:0045893 | GO:GO:0046872 | Symbol:HCA2 | InterPro:IPR003851 | RefSeq:NP_201099.1 |
| ProteinID:OAO92295.1 | PFAM:PD007478 | PFAM:PF02701 | PO:PO:0000013 | PO:PO:0000036 | PO:PO:0000037 |
| PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0003011 | PO:PO:0004507 |
| PO:PO:0005017 | PO:PO:0005417 | PO:PO:0005597 | PO:PO:0006202 | PO:PO:0006203 | PO:PO:0007098 |
| PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF80 | UniProt:Q9FM03 |
| UniParc:UPI0000162929 | InterPro:Znf_Dof | SEG:seg | : | : | : |
Description
DOF5.6HCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF22]
Coordinates
chr5:-:25256852..25258704
Molecular Weight (calculated)
39803.1 Da
IEP (calculated)
8.142
GRAVY (calculated)
-0.701
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLTSLQVCM DSDWLQESES SGGSMLDSST NSPSAADILA ACSTRPQASA VAVAAAALMD GGRRLRPPHD HPQKCPRCES THTKFCYYNN YSLSQPRYFC
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSNIVTAN TSDLMALAHS HQNYQHSPLG FSHFGGMMGS YSTPEHGNVG FLESKYGGLL
201: SQSPRPIDFL DSKFDLMGVN NDNLVMVNHG SNGDHHHHHN HHMGLNHGVG LNNNNNNGGF NGISTGGNGN GGGLMDISTC QRLMLSNYDH HHYNHQEDHQ
301: RVATIMDVKP NPKLLSLDWQ QDQCYSNGGG SGGAGKSDGG GYGNGGYING LGSSWNGLMN GYGTSTKTNS LV
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSNIVTAN TSDLMALAHS HQNYQHSPLG FSHFGGMMGS YSTPEHGNVG FLESKYGGLL
201: SQSPRPIDFL DSKFDLMGVN NDNLVMVNHG SNGDHHHHHN HHMGLNHGVG LNNNNNNGGF NGISTGGNGN GGGLMDISTC QRLMLSNYDH HHYNHQEDHQ
301: RVATIMDVKP NPKLLSLDWQ QDQCYSNGGG SGGAGKSDGG GYGNGGYING LGSSWNGLMN GYGTSTKTNS LV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.