CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017788_P001	Maize	nucleus	91.86	94.1
Zm00001d051577_P001	Maize	nucleus	90.51	89.9
Os02t0707200-00	Rice	nucleus	73.56	75.35
TraesCS6D01G254200.1	Wheat	nucleus	76.95	74.18
TraesCS6B01G301500.1	Wheat	nucleus	76.27	73.53
TraesCS6A01G274000.1	Wheat	nucleus	76.27	73.53
VIT_17s0000g08290.t01	Wine grape	nucleus	40.68	38.96
Solyc06g071480.2.1	Tomato	nucleus	35.25	37.28
PGSC0003DMT400069680	Potato	nucleus	35.25	37.14
KRH63537	Soybean	nucleus	41.02	35.17
KRH54395	Soybean	nucleus	41.69	34.84
KRH03289	Soybean	nucleus	38.31	34.24
CDY16754	Canola	nucleus	38.98	33.82
CDX87270	Canola	nucleus	38.98	33.72
Bra035873.1-P	Field mustard	nucleus	38.64	33.53
KRH57071	Soybean	nucleus	37.29	33.33
Solyc03g112930.2.1	Tomato	nucleus	37.63	33.33
PGSC0003DMT400046598	Potato	nucleus	37.29	33.33
CDY00341	Canola	nucleus	38.98	31.25
AT5G62940.1	Thale cress	nucleus	39.32	31.18
CDX84369	Canola	nucleus	38.64	30.73
Bra010136.1-P	Field mustard	nucleus	38.31	30.71
GSMUA_Achr1P20550_001	Banana	nucleus	24.07	26.3
KXG26925	Sorghum	nucleus	29.15	22.16
EES07840	Sorghum	nucleus	25.42	22.06
EES15496	Sorghum	nucleus	25.76	21.47
KXG30845	Sorghum	nucleus	22.03	21.38
OQU79380	Sorghum	nucleus, vacuole	24.07	20.88
KXG39680	Sorghum	nucleus	27.12	20.3
KXG31020	Sorghum	nucleus	29.15	18.82
EES03938	Sorghum	nucleus	21.36	18.81
EER97271	Sorghum	nucleus	21.69	18.08
EES18302	Sorghum	plastid	22.03	17.76
KXG37254	Sorghum	nucleus	26.1	17.7
EER91281	Sorghum	nucleus	22.71	17.4
KXG21095	Sorghum	nucleus	21.02	16.1
KXG37485	Sorghum	nucleus	20.0	15.53

Protein Annotations

MapMan:15.5.1.5	EntrezGene:8073155	UniProt:C5Y0A5	EnsemblPlants:EES05649	ProteinID:EES05649	ProteinID:EES05649.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361
PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF80	EnsemblPlantsGene:SORBI_3004G266200	UniParc:UPI0001A85D80	RefSeq:XP_002452673.1
InterPro:Znf_Dof	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:61069054..61072717

Molecular Weight (calculated)

30936.0 Da

IEP (calculated)

8.277

GRAVY (calculated)

-0.324

Length

295 amino acids

Sequence
(BLAST)

001: MMAGAPPMHI CMDSDWLKGI VPEEPGMGSS SPSAELIACP RPMHAVAAAA AADRRLRPQH DQPLKCPRCE STHTKFCYYN NYSLSQPRYF CKTCRRYWTK
101: GGSLRNVPVG GGCRKNKRAS AKKPPAPPMQ PRHMAETGLH LSFSGMPQLP PPSADPLCSL GLLDWKYDPI LTGSGGGAAA GSLDGASSEA HFAGAGMLGI
201: PGGGGSGGEC HALSALRYAA GLGEHLQLQG LPFGGRAEHD GMEVKPPATE RLLSLDWYSE TSRAPESAIS SLGALGLWSG MLGGAHQHHG SSAAI

Best Arabidopsis Sequence Match ( AT5G62940.1 )
(BLAST)

001: MGLTSLQVCM DSDWLQESES SGGSMLDSST NSPSAADILA ACSTRPQASA VAVAAAALMD GGRRLRPPHD HPQKCPRCES THTKFCYYNN YSLSQPRYFC
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSNIVTAN TSDLMALAHS HQNYQHSPLG FSHFGGMMGS YSTPEHGNVG FLESKYGGLL
201: SQSPRPIDFL DSKFDLMGVN NDNLVMVNHG SNGDHHHHHN HHMGLNHGVG LNNNNNNGGF NGISTGGNGN GGGLMDISTC QRLMLSNYDH HHYNHQEDHQ
301: RVATIMDVKP NPKLLSLDWQ QDQCYSNGGG SGGAGKSDGG GYGNGGYING LGSSWNGLMN GYGTSTKTNS LV

Arabidopsis Description

DOF5.6HCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF22]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.