Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400069680 | Potato | nucleus | 95.34 | 95.0 |
| VIT_17s0000g08290.t01 | Wine grape | nucleus | 60.57 | 54.87 |
| Solyc03g112930.2.1 | Tomato | nucleus | 62.72 | 52.55 |
| KRH63537 | Soybean | nucleus | 59.5 | 48.26 |
| KRH54395 | Soybean | nucleus | 59.5 | 47.03 |
| KRH03289 | Soybean | nucleus | 53.76 | 45.45 |
| KRH57071 | Soybean | nucleus | 52.33 | 44.24 |
| GSMUA_Achr10P... | Banana | nucleus | 37.63 | 40.7 |
| AT5G62940.1 | Thale cress | nucleus | 53.76 | 40.32 |
| Bra035873.1-P | Field mustard | nucleus | 49.1 | 40.29 |
| CDY16754 | Canola | nucleus | 49.1 | 40.29 |
| CDX87270 | Canola | nucleus | 49.1 | 40.18 |
| CDY00341 | Canola | nucleus | 52.33 | 39.67 |
| CDX84369 | Canola | nucleus | 51.97 | 39.08 |
| Bra010136.1-P | Field mustard | nucleus | 50.9 | 38.59 |
| GSMUA_Achr2P23020_001 | Banana | nucleus | 37.28 | 37.82 |
| Zm00001d017788_P001 | Maize | nucleus | 36.56 | 35.42 |
| Zm00001d051577_P001 | Maize | nucleus | 37.63 | 35.35 |
| EES05649 | Sorghum | nucleus | 37.28 | 35.25 |
| TraesCS6D01G254200.1 | Wheat | nucleus | 37.28 | 33.99 |
| TraesCS6A01G274000.1 | Wheat | nucleus | 37.28 | 33.99 |
| Os02t0707200-00 | Rice | nucleus | 34.77 | 33.68 |
| TraesCS6B01G301500.1 | Wheat | nucleus | 36.92 | 33.66 |
| Solyc03g082840.2.1 | Tomato | nucleus | 26.52 | 28.68 |
| Solyc10g009360.2.1 | Tomato | nucleus | 25.09 | 26.82 |
| Solyc08g082910.1.1 | Tomato | nucleus | 30.11 | 26.42 |
| Solyc06g075370.2.1 | Tomato | nucleus | 28.67 | 26.4 |
| GSMUA_Achr1P20550_001 | Banana | nucleus | 25.09 | 25.93 |
| Solyc01g096120.2.1 | Tomato | nucleus | 25.09 | 25.36 |
| Solyc04g070960.1.1 | Tomato | nucleus | 23.3 | 24.34 |
| Solyc11g072500.1.1 | Tomato | nucleus | 24.73 | 24.21 |
| Solyc02g090310.1.1 | Tomato | nucleus | 21.86 | 23.46 |
| Solyc05g054510.1.1 | Tomato | nucleus | 23.66 | 22.15 |
| Solyc02g077960.1.1 | Tomato | nucleus | 21.51 | 20.07 |
| Solyc10g086440.1.1 | Tomato | nucleus | 25.81 | 19.89 |
| Solyc02g078620.1.1 | Tomato | nucleus | 19.0 | 18.66 |
| Solyc06g005130.2.1 | Tomato | nucleus | 20.43 | 18.51 |
| Solyc06g076030.2.1 | Tomato | nucleus | 20.79 | 17.37 |
| Solyc11g066050.1.1 | Tomato | nucleus | 19.71 | 17.24 |
| Solyc11g010940.1.1 | Tomato | nucleus | 21.86 | 16.27 |
| Solyc09g010680.2.1 | Tomato | nucleus | 22.94 | 16.08 |
| Solyc02g077950.1.1 | Tomato | nucleus | 21.15 | 15.57 |
Protein Annotations
| MapMan:15.5.1.5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003851 | UniProt:K4C8M0 | PFAM:PD007478 |
| PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF80 | EnsemblPlantsGene:Solyc06g071480.2 |
| EnsemblPlants:Solyc06g071480.2.1 | UniParc:UPI0002767103 | InterPro:Znf_Dof | SEG:seg | : | : |
Description
Dof zinc finger protein DOF5.6 [Source:Projected from Arabidopsis thaliana (AT5G62940) UniProtKB/Swiss-Prot;Acc:Q9FM03]
Coordinates
chr6:+:43993924..43995928
Molecular Weight (calculated)
31178.4 Da
IEP (calculated)
7.734
GRAVY (calculated)
-0.689
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MGITSLQVCM DSSNWLQDTI PEENEFDSSS SPSGGDIFTC SRPLMERKLR PQHDKPINCP RCDSTHTKFC YYNNYSLSQP RYFCKSCRRY WTKGGTLRNI
101: PVGGGCRKNK KVSSKNSKLP NDNITTPHVE SSNNYPEMSF SHFGNFMGNN NMNHNFMHHA PIDFMDSSKY QALVGTTSTR NQDFFGNVNV GTTGLINGYG
201: EMDISRIGPH YCSSAFGLPN MDGNIINYEG QNITMDVKPN PKILSLEWHD QGYFNGGLGT WSGLMNNGYG STATTNSLV
101: PVGGGCRKNK KVSSKNSKLP NDNITTPHVE SSNNYPEMSF SHFGNFMGNN NMNHNFMHHA PIDFMDSSKY QALVGTTSTR NQDFFGNVNV GTTGLINGYG
201: EMDISRIGPH YCSSAFGLPN MDGNIINYEG QNITMDVKPN PKILSLEWHD QGYFNGGLGT WSGLMNNGYG STATTNSLV
001: MGLTSLQVCM DSDWLQESES SGGSMLDSST NSPSAADILA ACSTRPQASA VAVAAAALMD GGRRLRPPHD HPQKCPRCES THTKFCYYNN YSLSQPRYFC
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSNIVTAN TSDLMALAHS HQNYQHSPLG FSHFGGMMGS YSTPEHGNVG FLESKYGGLL
201: SQSPRPIDFL DSKFDLMGVN NDNLVMVNHG SNGDHHHHHN HHMGLNHGVG LNNNNNNGGF NGISTGGNGN GGGLMDISTC QRLMLSNYDH HHYNHQEDHQ
301: RVATIMDVKP NPKLLSLDWQ QDQCYSNGGG SGGAGKSDGG GYGNGGYING LGSSWNGLMN GYGTSTKTNS LV
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSNIVTAN TSDLMALAHS HQNYQHSPLG FSHFGGMMGS YSTPEHGNVG FLESKYGGLL
201: SQSPRPIDFL DSKFDLMGVN NDNLVMVNHG SNGDHHHHHN HHMGLNHGVG LNNNNNNGGF NGISTGGNGN GGGLMDISTC QRLMLSNYDH HHYNHQEDHQ
301: RVATIMDVKP NPKLLSLDWQ QDQCYSNGGG SGGAGKSDGG GYGNGGYING LGSSWNGLMN GYGTSTKTNS LV
Arabidopsis Description
DOF5.6HCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF22]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.