Factsheet for Solyc02g077960.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076397	Potato	nucleus	89.3	93.68
VIT_10s0003g00030.t01	Wine grape	nucleus	41.14	41.14
KRH21403	Soybean	nucleus	36.79	34.7
KRH10904	Soybean	nucleus	36.12	34.5
Solyc03g082840.2.1	Tomato	nucleus	22.41	25.97
Solyc06g075370.2.1	Tomato	nucleus	25.75	25.41
Solyc11g072500.1.1	Tomato	nucleus	24.08	25.26
Solyc01g096120.2.1	Tomato	nucleus	22.41	24.28
Solyc10g009360.2.1	Tomato	nucleus	21.07	24.14
Solyc02g090310.1.1	Tomato	nucleus	20.4	23.46
Solyc04g070960.1.1	Tomato	nucleus	19.4	21.72
Solyc06g071480.2.1	Tomato	nucleus	20.07	21.51
Solyc06g005130.2.1	Tomato	nucleus	20.74	20.13
Solyc03g112930.2.1	Tomato	nucleus	21.74	19.52
Solyc08g082910.1.1	Tomato	nucleus	20.74	19.5
Solyc05g054510.1.1	Tomato	nucleus	19.4	19.46
Solyc06g076030.2.1	Tomato	nucleus	21.4	19.16
Solyc02g078620.1.1	Tomato	nucleus	18.06	19.01
Solyc11g066050.1.1	Tomato	nucleus	18.73	17.55
Solyc10g086440.1.1	Tomato	nucleus	21.07	17.4
Solyc09g010680.2.1	Tomato	nucleus	22.74	17.09
Solyc02g077950.1.1	Tomato	nucleus	20.07	15.83
Solyc11g010940.1.1	Tomato	nucleus	19.4	15.47

Protein Annotations

MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	UniProt:K4B921	PFAM:PD007478
PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF64	EnsemblPlantsGene:Solyc02g077960.1
EnsemblPlants:Solyc02g077960.1.1	UniParc:UPI0002767EFC	InterPro:Znf_Dof	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:-:42787628..42788527

Molecular Weight (calculated)

32215.1 Da

IEP (calculated)

9.919

GRAVY (calculated)

-0.888

Length

299 amino acids

Sequence
(BLAST)

001: MEDQLGGRSS GENDRNQQQR RMKMPENNSA SPAQPPPQKC PRCDSNNTKF CYYNNYSLTQ PRYFCKTCRR YWTQGGTLRN VPVGGGCRKG KRTMKGGGSS
101: SSAGESSSSR SHHQVLYPPQ IPNLSAAAAA FFSGNNSRSQ PPPLPSMSSL YTGAAGGGGF LSSLAAMQSM SQLSQGINNQ SQLGVISGTN NNNNQFGNFN
201: IPTPPPKVQI DQQMESTGFY QKPNLESSFF PSDQTLQFQP ARPLGSWTQR FINNNNNNIW PNNSASNTSS GAASSSAANA SLGPNDHQWP DLPGFGPSP

Best Arabidopsis Sequence Match ( AT5G60850.1 )
(BLAST)

001: MQDIHDFSMN GVGGGGGGGG RFFGGGIGGG GGGDRRMRAH QNNILNHHQS LKCPRCNSLN TKFCYYNNYN LSQPRHFCKN CRRYWTKGGV LRNVPVGGGC
101: RKAKRSKTKQ VPSSSSADKP TTTQDDHHVE EKSSTGSHSS SESSSLTASN STTVAAVSVT AAAEVASSVI PGFDMPNMKI YGNGIEWSTL LGQGSSAGGV
201: FSEIGGFPAV SAIETTPFGF GGKFVNQDDH LKLEGETVQQ QQFGDRTAQV EFQGRSSDPN MGFEPLDWGS GGGDQTLFDL TSTVDHAYWS QSQWTSSDQD
301: QSGLYLP

Arabidopsis Description

DOF5.4OBP4 [Source:UniProtKB/TrEMBL;Acc:A0A178UF84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.