Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400078164 | Potato | nucleus | 89.52 | 93.44 |
| GSMUA_Achr5P28660_001 | Banana | nucleus | 35.63 | 42.96 |
| GSMUA_Achr10P... | Banana | nucleus | 35.93 | 41.38 |
| GSMUA_Achr9P03270_001 | Banana | nucleus | 27.25 | 40.99 |
| GSMUA_Achr8P02600_001 | Banana | nucleus | 33.53 | 39.72 |
| Solyc05g054510.1.1 | Tomato | nucleus | 34.73 | 38.93 |
| GSMUA_Achr5P29110_001 | Banana | nucleus | 39.52 | 38.82 |
| GSMUA_Achr8P02150_001 | Banana | nucleus | 37.43 | 37.65 |
| GSMUA_Achr11P... | Banana | nucleus | 39.52 | 36.77 |
| GSMUA_Achr6P34180_001 | Banana | nucleus | 35.93 | 36.14 |
| Solyc10g086440.1.1 | Tomato | nucleus | 38.62 | 35.64 |
| GSMUA_Achr10P... | Banana | nucleus | 35.33 | 35.01 |
| Zm00001d041549_P001 | Maize | nucleus | 33.53 | 32.65 |
| TraesCS5B01G087600.3 | Wheat | nucleus | 33.53 | 32.56 |
| TraesCS5A01G078100.1 | Wheat | nucleus | 33.23 | 32.46 |
| Solyc09g010680.2.1 | Tomato | nucleus | 38.62 | 32.41 |
| OQU79380 | Sorghum | nucleus, vacuole | 32.93 | 32.35 |
| Zm00001d030727_P002 | Maize | nucleus | 32.93 | 32.26 |
| HORVU5Hr1G021290.1 | Barley | nucleus | 33.23 | 32.17 |
| TraesCS5D01G093800.2 | Wheat | nucleus | 33.23 | 32.17 |
| Os12t0569900-01 | Rice | nucleus | 33.23 | 31.9 |
| Solyc11g066050.1.1 | Tomato | nucleus | 29.64 | 31.03 |
| Solyc06g075370.2.1 | Tomato | nucleus | 23.05 | 25.41 |
| Solyc02g090310.1.1 | Tomato | nucleus | 19.46 | 25.0 |
| Solyc03g082840.2.1 | Tomato | nucleus | 18.86 | 24.42 |
| Solyc10g009360.2.1 | Tomato | nucleus | 18.26 | 23.37 |
| Solyc11g072500.1.1 | Tomato | nucleus | 19.46 | 22.81 |
| Solyc02g078620.1.1 | Tomato | nucleus | 19.16 | 22.54 |
| Solyc01g096120.2.1 | Tomato | nucleus | 18.56 | 22.46 |
| Solyc08g082910.1.1 | Tomato | nucleus | 20.96 | 22.01 |
| Solyc11g010940.1.1 | Tomato | nucleus | 24.55 | 21.87 |
| Solyc02g077960.1.1 | Tomato | nucleus | 19.16 | 21.4 |
| Solyc04g070960.1.1 | Tomato | nucleus | 16.77 | 20.97 |
| Solyc06g071480.2.1 | Tomato | nucleus | 17.37 | 20.79 |
| Solyc02g077950.1.1 | Tomato | nucleus | 23.05 | 20.32 |
| Solyc03g112930.2.1 | Tomato | nucleus | 19.76 | 19.82 |
| Solyc06g005130.2.1 | Tomato | nucleus | 16.47 | 17.86 |
Protein Annotations
| MapMan:15.5.1.5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003851 | UniProt:K4C9W4 | PFAM:PD007478 |
| PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF66 | EnsemblPlantsGene:Solyc06g076030.2 |
| EnsemblPlants:Solyc06g076030.2.1 | UniParc:UPI0002766F24 | InterPro:Znf_Dof | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6:-:47200113..47201777
Molecular Weight (calculated)
36039.4 Da
IEP (calculated)
9.282
GRAVY (calculated)
-0.827
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFSSFPVYL DHPNLHQLQQ ADGHQQGNTG LELPTVQPPP PMQVGASPGS IRPGSMVDRA RLAKIPLPEA GLKCPRCDST NTKFCYFNNY NLSQPRHFCK
101: TCRRYWTRGG ALRSVPVGGG CRRNKRSKSS SNNNNNNSSK STGGSNVNTN KTIASGTSTS ASPSSCSTEI MNGRHHFPHE QPTQLTPLMA AFQNLNHHYG
201: GFQPNLVSTH HGNGSALSSH HHEMGFQIGN STNTNNTNNL PVPSGGGSDH QWRLPSLAAN TNLYPFQHGS DQGIHESSAG NNNNINGHHD EQGLNSTKQF
301: LGTMENNSNQ YWGGNAWTGG FSGLNSSSSA SHLL
101: TCRRYWTRGG ALRSVPVGGG CRRNKRSKSS SNNNNNNSSK STGGSNVNTN KTIASGTSTS ASPSSCSTEI MNGRHHFPHE QPTQLTPLMA AFQNLNHHYG
201: GFQPNLVSTH HGNGSALSSH HHEMGFQIGN STNTNNTNNL PVPSGGGSDH QWRLPSLAAN TNLYPFQHGS DQGIHESSAG NNNNINGHHD EQGLNSTKQF
301: LGTMENNSNQ YWGGNAWTGG FSGLNSSSSA SHLL
001: MVFSSLPVNQ FDSQNWQQQG NQHQLECVTT DQNPNNYLRQ LSSPPTSQVA GSSQARVNSM VERARIAKVP LPEAALNCPR CDSTNTKFCY FNNYSLTQPR
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGKGGVNQG DSQQKSSDYS NQLMFKPLMD FSSGGVSATQ TRNVKAEEND
301: QDRGRDGDGV NNLSRNFLGN ININSGRNEE YTSWGGNSSW TGFTSNNSTG HLSF
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGKGGVNQG DSQQKSSDYS NQLMFKPLMD FSSGGVSATQ TRNVKAEEND
301: QDRGRDGDGV NNLSRNFLGN ININSGRNEE YTSWGGNSSW TGFTSNNSTG HLSF
Arabidopsis Description
OBP3OBF-binding protein 3 [Source:UniProtKB/TrEMBL;Acc:F4IWU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.