Factsheet for Os12t0569900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G078100.1	Wheat	nucleus	76.72	78.07
HORVU5Hr1G021290.1	Barley	nucleus	77.3	77.97
TraesCS5D01G093800.2	Wheat	nucleus	76.72	77.39
TraesCS5B01G087600.3	Wheat	nucleus	76.44	77.33
OQU79380	Sorghum	nucleus, vacuole	75.0	76.76
Zm00001d030727_P002	Maize	nucleus	74.14	75.66
GSMUA_Achr10P...	Banana	nucleus	34.48	35.61
PGSC0003DMT400078164	Potato	nucleus	32.47	35.31
KRH46814	Soybean	nucleus	35.63	33.79
KRG99864	Soybean	nucleus	35.06	33.61
Solyc06g076030.2.1	Tomato	nucleus	31.9	33.23
Os05t0112200-01	Rice	nucleus	27.01	32.41
Os03t0821200-00	Rice	nucleus	37.64	31.64
Os07t0236700-01	Rice	nucleus	30.46	30.03
KRH70477	Soybean	nucleus	30.75	28.84
Os02t0726300-01	Rice	nucleus	19.83	24.47
Os04t0567800-01	Rice	nucleus	24.43	23.42
Os02t0707200-00	Rice	nucleus	19.25	23.26
Os06t0284500-00	Rice	nucleus	19.25	23.18
Os02t0673700-01	Rice	nucleus	24.71	22.57
Os07t0508900-00	Rice	cytosol	2.59	22.5
Os01t0865800-00	Rice	nucleus	18.39	19.45
Os05t0440000-00	Rice	nucleus	18.1	19.27
Os03t0764900-01	Rice	nucleus	19.25	18.66
Os02t0252400-01	Rice	nucleus	17.24	16.09
Os03t0276300-00	Rice	cytosol	4.89	12.23
Os07t0508700-00	Rice	cytosol	2.87	9.62

Protein Annotations

MapMan:15.5.1.5	EntrezGene:4352574	ProteinID:ABA99651.2	ProteinID:BAF30095.2	ProteinID:BAT17729.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003851	EnsemblPlantsGene:Os12g0569900	EnsemblPlants:Os12t0569900-01	PFAM:PD007478	PFAM:PF02701
ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF75	UniProt:Q2QND3	UniParc:UPI0000D89E48
RefSeq:XP_015619417.1	InterPro:Znf_Dof	SEG:seg	:	:	:

Description

DNA BINDING WITH ONE FINGER 28Similar to Zn finger protein (Fragment). (Os12t0569900-01)

Coordinates

chr12:+:23458337..23460708

Molecular Weight (calculated)

35338.3 Da

IEP (calculated)

8.893

GRAVY (calculated)

-0.235

Length

348 amino acids

Sequence
(BLAST)

001: MVFSSLPIFL DPPNWTQMQQ QPLQCLIGGG GSDHHHLMPP PSGLAPLPSA AGAADTAASA PAAAAQQQQP RPAVVSMSER ARLARVPLPE PGTLRCPRCD
101: STNTKFCYFN NYSLSQPRHF CKACRRYWTR GGALRNVPVG GGCRRNTKRS TKKSSSSSSR QGGGAGNAAA AATSSSSTTS TSTTATTSSA AAAAAAAAAD
201: VIASMQAGGA LLPHHLIGGL PSSAAAAAAL EASLEGYHHH HHAHGHQLPF LQPPPFLQQG LHGYHFADGD VAAGAALADG GFPRGVASGL LAQLASVKME
301: EHGTNNGGGV GGGFVGAHEQ YWHGGNGGGG WPAEFLSGFS SSSSGNVL

Best Arabidopsis Sequence Match ( AT3G55370.2 )
(BLAST)

001: MVFSSLPVNQ FDSQNWQQQG NQHQLECVTT DQNPNNYLRQ LSSPPTSQVA GSSQARVNSM VERARIAKVP LPEAALNCPR CDSTNTKFCY FNNYSLTQPR
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGKGGVNQG DSQQKSSDYS NQLMFKPLMD FSSGGVSATQ TRNVKAEEND
301: QDRGRDGDGV NNLSRNFLGN ININSGRNEE YTSWGGNSSW TGFTSNNSTG HLSF

Arabidopsis Description

OBP3OBF-binding protein 3 [Source:UniProtKB/TrEMBL;Acc:F4IWU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.