Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26889012
|
gfp PMID:
26889012
doi
State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources/Guangdong Key Laboratory for Postharvest Science, College of Horticultural Science, South China Agricultural University, Guangzhou 510642, PR China College of Agriculture, GuangXi University, Nanning 530004, PR China., State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources/Guangdong Key Laboratory for Postharvest Science, College of Horticultural Science, South China Agricultural University, Guangzhou 510642, PR China wjlu@scau.edu.cn., State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources/Guangdong Key Laboratory for Postharvest Science, College of Horticultural Science, South China Agricultural University, Guangzhou 510642, PR China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P15150_001 | Banana | nucleus | 23.7 | 35.36 |
| GSMUA_Achr4P30470_001 | Banana | nucleus | 20.0 | 33.54 |
| GSMUA_Achr5P28660_001 | Banana | nucleus | 28.89 | 28.16 |
| GSMUA_Achr10P... | Banana | nucleus | 25.93 | 27.13 |
| GSMUA_Achr6P33410_001 | Banana | nucleus | 24.44 | 26.72 |
| GSMUA_Achr2P23020_001 | Banana | nucleus | 26.67 | 26.18 |
| GSMUA_Achr8P32880_001 | Banana | nucleus | 23.7 | 25.6 |
| GSMUA_Achr3P18260_001 | Banana | nucleus | 21.11 | 25.45 |
| GSMUA_Achr9P03270_001 | Banana | nucleus | 20.74 | 25.23 |
| GSMUA_Achr10P... | Banana | nucleus | 27.04 | 25.17 |
| GSMUA_Achr5P23930_001 | Banana | nucleus | 18.15 | 25.13 |
| Solyc06g071480.2.1 | Tomato | nucleus | 25.93 | 25.09 |
| VIT_17s0000g08290.t01 | Wine grape | nucleus | 28.52 | 25.0 |
| PGSC0003DMT400069680 | Potato | nucleus | 25.93 | 25.0 |
| Zm00001d017788_P001 | Maize | nucleus | 26.3 | 24.65 |
| TraesCS6A01G274000.1 | Wheat | nucleus | 27.78 | 24.51 |
| TraesCS6D01G254200.1 | Wheat | nucleus | 27.78 | 24.51 |
| GSMUA_Achr8P02600_001 | Banana | nucleus | 25.56 | 24.47 |
| GSMUA_Achr5P07150_001 | Banana | nucleus | 29.63 | 24.24 |
| TraesCS6B01G301500.1 | Wheat | nucleus | 27.41 | 24.18 |
| GSMUA_Achr6P25190_001 | Banana | nucleus | 22.96 | 24.12 |
| GSMUA_Achr1P03930_001 | Banana | nucleus | 22.96 | 24.12 |
| EES05649 | Sorghum | nucleus | 26.3 | 24.07 |
| Zm00001d051577_P001 | Maize | nucleus | 26.3 | 23.91 |
| GSMUA_Achr11P... | Banana | nucleus | 24.07 | 23.9 |
| GSMUA_Achr8P11850_001 | Banana | nucleus | 26.3 | 23.83 |
| GSMUA_Achr11P... | Banana | nucleus | 25.93 | 23.81 |
| GSMUA_Achr1P17670_001 | Banana | nucleus | 18.89 | 23.5 |
| GSMUA_Achr8P02150_001 | Banana | nucleus | 28.89 | 23.49 |
| GSMUA_Achr5P19980_001 | Banana | nucleus | 22.96 | 23.31 |
| Os02t0707200-00 | Rice | nucleus | 24.81 | 23.26 |
| GSMUA_Achr4P27160_001 | Banana | nucleus | 24.07 | 23.21 |
| GSMUA_Achr3P10670_001 | Banana | nucleus | 20.37 | 23.21 |
| GSMUA_Achr6P34180_001 | Banana | nucleus | 28.52 | 23.19 |
| GSMUA_Achr10P... | Banana | nucleus | 28.52 | 22.85 |
| GSMUA_Achr10P... | Banana | nucleus | 24.07 | 22.81 |
| GSMUA_Achr3P13830_001 | Banana | nucleus | 22.96 | 22.79 |
| GSMUA_Achr11P... | Banana | nucleus | 21.85 | 22.26 |
| GSMUA_Achr5P29110_001 | Banana | nucleus | 27.78 | 22.06 |
| GSMUA_Achr10P... | Banana | nucleus | 22.22 | 22.06 |
| GSMUA_Achr5P01010_001 | Banana | nucleus | 21.11 | 22.01 |
| GSMUA_Achr11P... | Banana | nucleus | 29.26 | 22.01 |
| GSMUA_Achr5P15160_001 | Banana | nucleus | 23.7 | 21.92 |
| GSMUA_Achr5P07290_001 | Banana | nucleus | 22.22 | 21.9 |
| KRH54395 | Soybean | nucleus | 28.52 | 21.81 |
| KRH63537 | Soybean | nucleus | 27.78 | 21.8 |
| GSMUA_Achr11P... | Banana | nucleus | 23.7 | 21.62 |
| KRH57071 | Soybean | nucleus | 26.3 | 21.52 |
| Solyc03g112930.2.1 | Tomato | nucleus | 26.3 | 21.32 |
| KRH03289 | Soybean | nucleus | 25.93 | 21.21 |
| PGSC0003DMT400046598 | Potato | nucleus | 25.93 | 21.21 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.48 | 20.79 |
| GSMUA_Achr3P29620_001 | Banana | nucleus | 21.48 | 20.35 |
| GSMUA_Achr8P15860_001 | Banana | nucleus, plastid | 27.41 | 20.33 |
| GSMUA_Achr9P04290_001 | Banana | nucleus | 21.85 | 20.27 |
| GSMUA_Achr9P25010_001 | Banana | nucleus | 22.96 | 20.26 |
| GSMUA_Achr9P11530_001 | Banana | nucleus, plastid | 27.04 | 20.17 |
| GSMUA_Achr8P02840_001 | Banana | nucleus | 22.59 | 19.87 |
| GSMUA_Achr6P19530_001 | Banana | nucleus | 18.15 | 19.84 |
| Bra035873.1-P | Field mustard | nucleus | 24.81 | 19.71 |
| CDY16754 | Canola | nucleus | 24.81 | 19.71 |
| CDX87270 | Canola | nucleus | 24.81 | 19.65 |
| GSMUA_Achr10P... | Banana | nucleus | 21.11 | 19.52 |
| GSMUA_Achr9P09650_001 | Banana | nucleus | 21.11 | 18.87 |
| AT5G62940.1 | Thale cress | nucleus | 25.93 | 18.82 |
| CDY00341 | Canola | nucleus | 25.56 | 18.75 |
| Bra010136.1-P | Field mustard | nucleus | 25.56 | 18.75 |
| GSMUA_Achr7P27030_001 | Banana | nucleus, plastid | 22.59 | 18.71 |
| CDX84369 | Canola | nucleus | 25.56 | 18.6 |
| GSMUA_Achr5P12010_001 | Banana | nucleus | 24.07 | 18.31 |
| GSMUA_Achr9P26560_001 | Banana | nucleus | 21.48 | 18.3 |
| GSMUA_Achr10P... | Banana | nucleus | 22.22 | 17.24 |
| GSMUA_Achr4P16590_001 | Banana | nucleus | 20.74 | 16.33 |
| GSMUA_Achr2P09970_001 | Banana | nucleus | 25.93 | 16.2 |
Protein Annotations
| MapMan:15.5.1.5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr1G20550_001 | EnsemblPlants:GSMUA_Achr1P20550_001 | EnsemblPlants:GSMUA_Achr1T20550_001 |
| InterPro:IPR003851 | UniProt:M0S1L3 | PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 |
| PANTHER:PTHR31992 | PANTHER:PTHR31992:SF80 | UniParc:UPI000296C6C6 | InterPro:Znf_Dof | SEG:seg | : |
Description
Putative Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr1G20550_001]
Coordinates
chr1:-:15472014..15473574
Molecular Weight (calculated)
29848.0 Da
IEP (calculated)
8.144
GRAVY (calculated)
-0.655
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIFMESSDW LKSVVREDGG MDFSSTPGEL LSCSRLPVGD RRLRPQQEQA KCPRCDSTHT KFCYYNNYSL SQPRYFCKAC RRYWTKGGAL RNVPVGGGCR
101: KNKRPAAKKA AEPHRQPAFS LPGATDLQSS FNGAQPQQFP SLTEIPGNLN FAECKYDSEL GSFSSGLHPM RTKYGAMQGS SQSFVFVSEG DIGLGVATQG
201: FPSDDNTREV FMDGSHAVLM QACQRIEDPF GQNRNTNTEF LRLLGRNSGV QMVDVTQWGT PTASDHGPES
101: KNKRPAAKKA AEPHRQPAFS LPGATDLQSS FNGAQPQQFP SLTEIPGNLN FAECKYDSEL GSFSSGLHPM RTKYGAMQGS SQSFVFVSEG DIGLGVATQG
201: FPSDDNTREV FMDGSHAVLM QACQRIEDPF GQNRNTNTEF LRLLGRNSGV QMVDVTQWGT PTASDHGPES
001: MGLTSLQVCM DSDWLQESES SGGSMLDSST NSPSAADILA ACSTRPQASA VAVAAAALMD GGRRLRPPHD HPQKCPRCES THTKFCYYNN YSLSQPRYFC
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSNIVTAN TSDLMALAHS HQNYQHSPLG FSHFGGMMGS YSTPEHGNVG FLESKYGGLL
201: SQSPRPIDFL DSKFDLMGVN NDNLVMVNHG SNGDHHHHHN HHMGLNHGVG LNNNNNNGGF NGISTGGNGN GGGLMDISTC QRLMLSNYDH HHYNHQEDHQ
301: RVATIMDVKP NPKLLSLDWQ QDQCYSNGGG SGGAGKSDGG GYGNGGYING LGSSWNGLMN GYGTSTKTNS LV
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSNIVTAN TSDLMALAHS HQNYQHSPLG FSHFGGMMGS YSTPEHGNVG FLESKYGGLL
201: SQSPRPIDFL DSKFDLMGVN NDNLVMVNHG SNGDHHHHHN HHMGLNHGVG LNNNNNNGGF NGISTGGNGN GGGLMDISTC QRLMLSNYDH HHYNHQEDHQ
301: RVATIMDVKP NPKLLSLDWQ QDQCYSNGGG SGGAGKSDGG GYGNGGYING LGSSWNGLMN GYGTSTKTNS LV
Arabidopsis Description
DOF5.6HCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF22]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.