Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P27160_001 | Banana | nucleus | 50.0 | 52.14 |
| GSMUA_Achr4P30470_001 | Banana | nucleus | 27.74 | 50.31 |
| GSMUA_Achr11P... | Banana | nucleus | 43.15 | 46.32 |
| GSMUA_Achr3P18260_001 | Banana | nucleus | 34.93 | 45.54 |
| GSMUA_Achr8P11850_001 | Banana | nucleus | 44.86 | 43.96 |
| KRH53547 | Soybean | nucleus | 30.48 | 43.2 |
| GSMUA_Achr11P... | Banana | nucleus | 43.49 | 43.2 |
| VIT_16s0098g01420.t01 | Wine grape | nucleus | 42.12 | 42.86 |
| GSMUA_Achr5P19980_001 | Banana | nucleus | 37.67 | 41.35 |
| KRH64383 | Soybean | nucleus | 39.73 | 39.06 |
| GSMUA_Achr1P03930_001 | Banana | nucleus | 29.79 | 33.85 |
| GSMUA_Achr7P15150_001 | Banana | nucleus | 20.89 | 33.7 |
| CDY51722 | Canola | nucleus | 31.16 | 32.73 |
| CDY07156 | Canola | nucleus | 31.16 | 32.62 |
| PGSC0003DMT400031928 | Potato | nucleus | 36.99 | 32.53 |
| GSMUA_Achr2P09970_001 | Banana | nucleus | 47.95 | 32.41 |
| Solyc08g082910.1.1 | Tomato | nucleus | 35.27 | 32.39 |
| AT4G00940.2 | Thale cress | nucleus | 32.53 | 32.31 |
| Bra037401.1-P | Field mustard | nucleus | 31.51 | 30.87 |
| GSMUA_Achr11P... | Banana | nucleus | 31.16 | 30.74 |
| GSMUA_Achr6P33410_001 | Banana | nucleus | 25.68 | 30.36 |
| GSMUA_Achr10P... | Banana | nucleus | 29.45 | 30.18 |
| GSMUA_Achr11P... | Banana | nucleus | 26.71 | 29.43 |
| GSMUA_Achr8P32880_001 | Banana | nucleus | 24.66 | 28.8 |
| GSMUA_Achr10P... | Banana | nucleus | 26.71 | 28.68 |
| GSMUA_Achr9P03270_001 | Banana | nucleus | 21.58 | 28.38 |
| GSMUA_Achr10P... | Banana | nucleus | 23.97 | 27.13 |
| GSMUA_Achr5P01010_001 | Banana | nucleus | 23.63 | 26.64 |
| GSMUA_Achr5P23930_001 | Banana | nucleus | 17.47 | 26.15 |
| GSMUA_Achr3P13830_001 | Banana | nucleus | 24.32 | 26.1 |
| GSMUA_Achr10P... | Banana | nucleus | 25.68 | 25.86 |
| GSMUA_Achr2P23020_001 | Banana | nucleus | 23.97 | 25.45 |
| GSMUA_Achr1P17670_001 | Banana | nucleus | 18.84 | 25.35 |
| GSMUA_Achr5P28660_001 | Banana | nucleus | 23.97 | 25.27 |
| GSMUA_Achr5P07290_001 | Banana | nucleus | 23.63 | 25.18 |
| GSMUA_Achr1P20550_001 | Banana | nucleus | 21.92 | 23.7 |
| GSMUA_Achr8P02150_001 | Banana | nucleus | 26.71 | 23.49 |
| GSMUA_Achr6P19530_001 | Banana | nucleus | 19.86 | 23.48 |
| GSMUA_Achr9P04290_001 | Banana | nucleus | 23.29 | 23.37 |
| GSMUA_Achr3P10670_001 | Banana | nucleus | 18.84 | 23.21 |
| GSMUA_Achr8P15860_001 | Banana | nucleus, plastid | 28.42 | 22.8 |
| GSMUA_Achr8P02600_001 | Banana | nucleus | 21.92 | 22.7 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.58 | 22.58 |
| GSMUA_Achr5P07150_001 | Banana | nucleus | 25.34 | 22.42 |
| GSMUA_Achr9P11530_001 | Banana | nucleus, plastid | 27.74 | 22.38 |
| GSMUA_Achr5P29110_001 | Banana | nucleus | 26.03 | 22.35 |
| GSMUA_Achr9P25010_001 | Banana | nucleus | 23.29 | 22.22 |
| GSMUA_Achr10P... | Banana | nucleus | 25.34 | 21.96 |
| GSMUA_Achr6P34180_001 | Banana | nucleus | 24.66 | 21.69 |
| GSMUA_Achr11P... | Banana | nucleus | 26.37 | 21.45 |
| GSMUA_Achr6P25190_001 | Banana | nucleus | 18.84 | 21.4 |
| GSMUA_Achr10P... | Banana | nucleus | 20.21 | 20.21 |
| GSMUA_Achr8P02840_001 | Banana | nucleus | 20.55 | 19.54 |
| GSMUA_Achr10P... | Banana | nucleus | 22.6 | 18.97 |
| GSMUA_Achr3P29620_001 | Banana | nucleus | 18.49 | 18.95 |
| GSMUA_Achr5P12010_001 | Banana | nucleus | 22.95 | 18.87 |
| GSMUA_Achr9P26560_001 | Banana | nucleus | 20.21 | 18.61 |
| GSMUA_Achr9P09650_001 | Banana | nucleus | 19.18 | 18.54 |
| GSMUA_Achr7P27030_001 | Banana | nucleus, plastid | 19.86 | 17.79 |
| GSMUA_Achr4P16590_001 | Banana | nucleus | 18.84 | 16.04 |
Protein Annotations
| MapMan:15.5.1.5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr5G15160_001 | EnsemblPlants:GSMUA_Achr5P15160_001 | EnsemblPlants:GSMUA_Achr5T15160_001 |
| InterPro:IPR003851 | UniProt:M0SYP5 | PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 |
| PANTHER:PTHR31992 | PANTHER:PTHR31992:SF15 | UniParc:UPI0002963598 | InterPro:Znf_Dof | SEG:seg | : |
Description
F-box family protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G15160_001]
Coordinates
chr5:+:11064099..11065882
Molecular Weight (calculated)
32524.2 Da
IEP (calculated)
10.153
GRAVY (calculated)
-0.332
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MDANQWPEEF ASSTITTTSS STCTTTRPQA TERRPRPQKE QALNCPRCNS TNTKFCYYNN YSLTQPRYFC KTCRRYWTEG GSLRNVPVGG GSRKSKRASI
101: SSAATTNSSS ITAAIATASA PKKIHADLIP PYISLSTTSE ALKFHEGQDL NLAFRQQSLR HGMTARGLGP FMPMLMPMPE YPTGFGLQEF RPPTLNFPLH
201: GIGGKVVILK GSGMVSLEEA HGRTKRSQGE QPSKITRTQE CIFFSISILD GIAGSLCLQL LRPHIRQMIH KLRLFSFISF LDTFWLLITV DM
101: SSAATTNSSS ITAAIATASA PKKIHADLIP PYISLSTTSE ALKFHEGQDL NLAFRQQSLR HGMTARGLGP FMPMLMPMPE YPTGFGLQEF RPPTLNFPLH
201: GIGGKVVILK GSGMVSLEEA HGRTKRSQGE QPSKITRTQE CIFFSISILD GIAGSLCLQL LRPHIRQMIH KLRLFSFISF LDTFWLLITV DM
001: MDTAQWPQEI VVKPLEEIVT NTCPKPQPQP LQPQQPPSVG GERKARPEKD QAVNCPRCNS TNTKFCYYNN YSLTQPRYFC KGCRRYWTEG GSLRNIPVGG
101: GSRKNKRSHS SSSDISNNHS DSTQPATKKH LSDHHHHLMS MSQQGLTGQN PKFLETTQQD LNLGFSPHGM IRTNFTDLIH NIGNNTNKSN NNNNPLIVSS
201: CSAMATSSLD LIRNNSNNGN SSNSSFMGFP VHNQDPASGG FSMQDHYKPC NTNTTLLGFS LDHHHNNGFH GGFQGGEEGG EGGDDVNGRH LFPFEDLKLP
301: VSSSSATINV DINEHQKRGS GSDAAATSGG YWTGMLSGGS WC
101: GSRKNKRSHS SSSDISNNHS DSTQPATKKH LSDHHHHLMS MSQQGLTGQN PKFLETTQQD LNLGFSPHGM IRTNFTDLIH NIGNNTNKSN NNNNPLIVSS
201: CSAMATSSLD LIRNNSNNGN SSNSSFMGFP VHNQDPASGG FSMQDHYKPC NTNTTLLGFS LDHHHNNGFH GGFQGGEEGG EGGDDVNGRH LFPFEDLKLP
301: VSSSSATINV DINEHQKRGS GSDAAATSGG YWTGMLSGGS WC
Arabidopsis Description
DOF4.6Dof zinc finger protein DOF4.6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.