Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037401.1-P | Field mustard | nucleus | 79.93 | 78.86 |
| CDY51722 | Canola | nucleus | 73.81 | 78.06 |
| CDY07156 | Canola | nucleus | 72.11 | 75.99 |
| KRH53547 | Soybean | nucleus | 27.89 | 39.81 |
| VIT_16s0098g01420.t01 | Wine grape | nucleus | 36.73 | 37.63 |
| KRH64383 | Soybean | nucleus | 36.05 | 35.69 |
| AT3G61850.4 | Thale cress | nucleus | 36.05 | 32.72 |
| Solyc08g082910.1.1 | Tomato | nucleus | 35.37 | 32.7 |
| GSMUA_Achr5P15160_001 | Banana | nucleus | 32.31 | 32.53 |
| PGSC0003DMT400031928 | Potato | nucleus | 36.05 | 31.93 |
| AT2G46590.2 | Thale cress | nucleus | 37.07 | 29.54 |
| AT1G64620.1 | Thale cress | nucleus | 34.01 | 28.41 |
| AT5G60200.1 | Thale cress | nucleus | 24.83 | 28.4 |
| AT4G24060.1 | Thale cress | nucleus | 32.31 | 27.78 |
| AT3G45610.1 | Thale cress | nucleus | 22.11 | 26.53 |
| AT3G52440.2 | Thale cress | nucleus | 22.79 | 25.19 |
| AT1G21340.1 | Thale cress | nucleus | 20.75 | 23.46 |
| AT5G62940.1 | Thale cress | nucleus | 29.25 | 23.12 |
| AT2G28510.1 | Thale cress | nucleus | 21.77 | 22.22 |
| AT5G60850.1 | Thale cress | nucleus | 22.11 | 21.17 |
| AT3G55370.3 | Thale cress | nucleus | 24.83 | 19.84 |
| AT1G28310.2 | Thale cress | nucleus | 22.11 | 19.4 |
| AT5G65590.1 | Thale cress | nucleus | 20.75 | 19.3 |
| AT2G28810.1 | Thale cress | nucleus | 21.09 | 18.24 |
| AT1G07640.3 | Thale cress | nucleus | 20.75 | 17.99 |
| AT2G37590.1 | Thale cress | nucleus | 18.71 | 16.67 |
| AT5G02460.1 | Thale cress | nucleus | 21.43 | 15.79 |
Protein Annotations
| MapMan:15.5.1.5 | EntrezGene:827952 | ProteinID:AAB62848.1 | EMBL:AB493666 | ProteinID:AEE81958.1 | ProteinID:ANM67790.1 |
| ProteinID:ANM67791.1 | ArrayExpress:AT4G00940 | EnsemblPlantsGene:AT4G00940 | RefSeq:AT4G00940 | TAIR:AT4G00940 | RefSeq:AT4G00940-TAIR-G |
| EnsemblPlants:AT4G00940.2 | ProteinID:CAB80903.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046872 | InterPro:IPR003851 | RefSeq:NP_001329595.1 | RefSeq:NP_001329596.1 | RefSeq:NP_192003.2 | PFAM:PD007478 |
| PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF78 | UniProt:Q9M161 |
| UniParc:UPI0000162965 | InterPro:Znf_Dof | SEG:seg | : | : | : |
Description
DOF4.1Dof zinc finger protein DOF4.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M161]
Coordinates
chr4:-:402959..404670
Molecular Weight (calculated)
33391.4 Da
IEP (calculated)
7.478
GRAVY (calculated)
-1.145
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHHQYHHHD QYQHQMMTST NNNSYNTIVT TQPPPTTTTM DSTTATTMIM DDEKKLMTTM STRPQEPRNC PRCNSSNTKF CYYNNYSLAQ PRYLCKSCRR
101: YWTEGGSLRN VPVGGGSRKN KKLPFPNSST SSSTKNLPDL NPPFVFTSSA SSSNPSKTHQ NNNDLSLSFS SPMQDKRAQG HYGHFSEQVV TGGQNCLFQA
201: PMGMIQFRQE YDHEHPKKNL GFSLDRNEEE IGNHDNFVVN EEGSKMMYPY GDHEDRQQHH HVRHDDGNKK REGGSSNELW SGIILGGDSG GPTW
101: YWTEGGSLRN VPVGGGSRKN KKLPFPNSST SSSTKNLPDL NPPFVFTSSA SSSNPSKTHQ NNNDLSLSFS SPMQDKRAQG HYGHFSEQVV TGGQNCLFQA
201: PMGMIQFRQE YDHEHPKKNL GFSLDRNEEE IGNHDNFVVN EEGSKMMYPY GDHEDRQQHH HVRHDDGNKK REGGSSNELW SGIILGGDSG GPTW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.