Factsheet for AT3G52440.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78095	Canola	nucleus	78.57	86.36
CDY59600	Canola	nucleus	78.2	85.25
Bra006923.1-P	Field mustard	nucleus	77.44	85.12
CDX90602	Canola	nucleus	75.56	83.4
Bra012804.1-P	Field mustard	nucleus	75.56	83.4
CDY29082	Canola	nucleus	75.19	83.33
KRG96269	Soybean	nucleus	29.7	45.93
KRG96256	Soybean	nucleus	35.34	34.69
VIT_08s0105g00170.t01	Wine grape	nucleus	34.21	33.7
GSMUA_Achr5P01010_001	Banana	nucleus	30.08	30.89
PGSC0003DMT400055052	Potato	nucleus	35.34	30.03
AT1G21340.1	Thale cress	nucleus	27.82	28.46
AT5G60200.1	Thale cress	nucleus	22.56	23.35
AT2G28510.1	Thale cress	nucleus	24.81	22.92
AT4G00940.2	Thale cress	nucleus	25.19	22.79
AT3G45610.1	Thale cress	nucleus	20.68	22.45
AT3G61850.4	Thale cress	nucleus	25.19	20.68
AT2G46590.2	Thale cress	nucleus	27.07	19.51
AT1G64620.1	Thale cress	nucleus	25.56	19.32
AT4G24060.1	Thale cress	nucleus	23.68	18.42
AT2G37590.1	Thale cress	nucleus	22.56	18.18
AT5G65590.1	Thale cress	nucleus	21.05	17.72
AT5G60850.1	Thale cress	nucleus	20.3	17.59
AT3G55370.3	Thale cress	nucleus	23.68	17.12
AT1G28310.2	Thale cress	nucleus	21.43	17.01
AT2G28810.1	Thale cress	nucleus	20.68	16.18
AT1G07640.3	Thale cress	nucleus	20.3	15.93
AT5G62940.1	Thale cress	nucleus	21.43	15.32
AT5G02460.1	Thale cress	nucleus	22.93	15.29

Protein Annotations

MapMan:15.5.1.5	EntrezGene:824409	ProteinID:AEE78946.1	ProteinID:ANM65573.1	ArrayExpress:AT3G52440	EnsemblPlantsGene:AT3G52440
RefSeq:AT3G52440	TAIR:AT3G52440	RefSeq:AT3G52440-TAIR-G	EnsemblPlants:AT3G52440.2	ProteinID:BAH30484.1	UniProt:C0SVE3
ProteinID:CAB43436.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046872	InterPro:IPR003851	RefSeq:NP_001327531.1	RefSeq:NP_190812.1	ProteinID:OAP04163.1	PFAM:PD007478
PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF73	UniParc:UPI000198E93F
InterPro:Znf_Dof	SEG:seg	:	:	:	:

Description

Dof-type zinc finger DNA-binding family protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE3]

Coordinates

chr3:+:19435122..19436266

Molecular Weight (calculated)

29268.8 Da

IEP (calculated)

5.508

GRAVY (calculated)

-0.566

Length

266 amino acids

Sequence
(BLAST)

001: MHAYIIHSYS DRLKKSERDM ERAEALTSSF IWRPNANANA EITPSCPRCG SSNTKFCYYN NYSLTQPRYF CKGCRRYWTK GGSLRNVPVG GGCRKSRRPK
101: SSSGNNTKTS LTANSGNPGG GSPSIDLALV YANFLNPKPD ESILQENCDL ATTDFLVDNP TGTSMDPSWS MDINDGHHDH YINPVEHIVE ECGYNGLPPF
201: PGEELLSLDT NGVWSDALLI GHNHVDVGVT PVQAVHEPVV HFADESNDST NLLFGSWSPF DFTADG

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.