Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72657 | Canola | nucleus | 73.68 | 86.3 |
| CDX92613 | Canola | nucleus | 86.26 | 86.01 |
| Bra019247.1-P | Field mustard | nucleus | 85.67 | 85.42 |
| CDY71763 | Canola | nucleus | 85.67 | 85.42 |
| CDY71684 | Canola | nucleus | 83.63 | 85.37 |
| CDY03494 | Canola | nucleus | 85.38 | 84.88 |
| Bra013758.1-P | Field mustard | nucleus | 83.04 | 84.52 |
| CDY35454 | Canola | nucleus | 82.16 | 82.16 |
| Bra010548.1-P | Field mustard | nucleus | 84.5 | 82.1 |
| CDY24798 | Canola | nucleus | 83.33 | 62.91 |
| KRG92523 | Soybean | nucleus | 42.98 | 48.68 |
| AT1G64620.1 | Thale cress | nucleus | 48.54 | 47.16 |
| GSMUA_Achr4P30470_001 | Banana | nucleus | 21.93 | 46.58 |
| Solyc03g082840.2.1 | Tomato | nucleus | 33.33 | 44.19 |
| PGSC0003DMT400047705 | Potato | nucleus | 33.33 | 43.68 |
| KRH34272 | Soybean | nucleus | 41.52 | 42.26 |
| VIT_15s0046g00150.t01 | Wine grape | nucleus | 36.55 | 39.56 |
| GSMUA_Achr11P... | Banana | nucleus | 33.04 | 38.44 |
| AT3G61850.4 | Thale cress | nucleus | 35.38 | 37.35 |
| AT2G46590.2 | Thale cress | nucleus | 38.01 | 35.23 |
| AT4G00940.2 | Thale cress | nucleus | 27.78 | 32.31 |
| GSMUA_Achr1P03930_001 | Banana | nucleus | 21.64 | 28.79 |
| AT5G60200.1 | Thale cress | nucleus | 20.47 | 27.24 |
| AT1G21340.1 | Thale cress | nucleus | 19.88 | 26.15 |
| AT3G45610.1 | Thale cress | nucleus | 18.13 | 25.31 |
| AT5G60850.1 | Thale cress | nucleus | 21.34 | 23.78 |
| AT3G52440.2 | Thale cress | nucleus | 18.42 | 23.68 |
| AT5G62940.1 | Thale cress | nucleus | 25.15 | 23.12 |
| AT2G37590.1 | Thale cress | nucleus | 22.22 | 23.03 |
| AT3G55370.3 | Thale cress | nucleus | 23.68 | 22.01 |
| AT2G28510.1 | Thale cress | nucleus | 17.84 | 21.18 |
| AT2G28810.1 | Thale cress | nucleus | 20.47 | 20.59 |
| AT1G07640.3 | Thale cress | nucleus | 19.88 | 20.06 |
| AT5G65590.1 | Thale cress | nucleus | 17.84 | 19.3 |
| AT5G02460.1 | Thale cress | nucleus | 21.34 | 18.3 |
| AT1G28310.2 | Thale cress | nucleus | 17.25 | 17.61 |
Protein Annotations
| MapMan:15.5.1.5 | EntrezGene:828506 | UniProt:A0A178V1X9 | ProteinID:AAB63618.1 | EMBL:AB493696 | ProteinID:AEE84846.1 |
| EMBL:AK317153 | ArrayExpress:AT4G24060 | EnsemblPlantsGene:AT4G24060 | RefSeq:AT4G24060 | TAIR:AT4G24060 | RefSeq:AT4G24060-TAIR-G |
| EnsemblPlants:AT4G24060.1 | TAIR:AT4G24060.1 | EMBL:AY037220 | EMBL:AY087686 | UniProt:B9DGH2 | EMBL:BT008771 |
| ProteinID:CAB51649.1 | ProteinID:CAB81324.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046872 | InterPro:IPR003851 | RefSeq:NP_567693.1 | ProteinID:OAO99713.1 | PFAM:PD007478 | PFAM:PF02701 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF78 | UniProt:Q8LAP8 | UniParc:UPI000009F5E6 |
| InterPro:Znf_Dof | SEG:seg | : | : | : | : |
Description
DOF4.6Dof zinc finger protein DOF4.6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAP8]
Coordinates
chr4:+:12503672..12505774
Molecular Weight (calculated)
37350.0 Da
IEP (calculated)
7.626
GRAVY (calculated)
-0.882
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTAQWPQEI VVKPLEEIVT NTCPKPQPQP LQPQQPPSVG GERKARPEKD QAVNCPRCNS TNTKFCYYNN YSLTQPRYFC KGCRRYWTEG GSLRNIPVGG
101: GSRKNKRSHS SSSDISNNHS DSTQPATKKH LSDHHHHLMS MSQQGLTGQN PKFLETTQQD LNLGFSPHGM IRTNFTDLIH NIGNNTNKSN NNNNPLIVSS
201: CSAMATSSLD LIRNNSNNGN SSNSSFMGFP VHNQDPASGG FSMQDHYKPC NTNTTLLGFS LDHHHNNGFH GGFQGGEEGG EGGDDVNGRH LFPFEDLKLP
301: VSSSSATINV DINEHQKRGS GSDAAATSGG YWTGMLSGGS WC
101: GSRKNKRSHS SSSDISNNHS DSTQPATKKH LSDHHHHLMS MSQQGLTGQN PKFLETTQQD LNLGFSPHGM IRTNFTDLIH NIGNNTNKSN NNNNPLIVSS
201: CSAMATSSLD LIRNNSNNGN SSNSSFMGFP VHNQDPASGG FSMQDHYKPC NTNTTLLGFS LDHHHNNGFH GGFQGGEEGG EGGDDVNGRH LFPFEDLKLP
301: VSSSSATINV DINEHQKRGS GSDAAATSGG YWTGMLSGGS WC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.