Factsheet for Bra010548.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35454	Canola	nucleus	94.32	97.08
Bra019247.1-P	Field mustard	nucleus	83.81	86.01
Bra013758.1-P	Field mustard	nucleus	80.68	84.52
AT4G24060.1	Thale cress	nucleus	82.1	84.5
CDY24798	Canola	nucleus	95.74	74.39
KRG92523	Soybean	nucleus	41.48	48.34
GSMUA_Achr4P30470_001	Banana	nucleus	21.02	45.96
Solyc03g082840.2.1	Tomato	nucleus	31.82	43.41
KRH34272	Soybean	nucleus	41.19	43.15
PGSC0003DMT400047705	Potato	nucleus	31.53	42.53
Bra027722.1-P	Field mustard	nucleus	38.35	41.67
GSMUA_Achr11P...	Banana	nucleus	31.82	38.1
VIT_15s0046g00150.t01	Wine grape	nucleus	33.81	37.66
Bra004525.1-P	Field mustard	nucleus	34.38	34.38
Bra014418.1-P	Field mustard	nucleus	30.11	34.19
Bra039272.1-P	Field mustard	nucleus, plastid	34.94	34.17
Bra000429.1-P	Field mustard	nucleus	35.8	34.15
Bra037401.1-P	Field mustard	nucleus	26.14	30.87
Bra009587.1-P	Field mustard	nucleus	14.77	29.38
GSMUA_Achr1P03930_001	Banana	nucleus	20.74	28.4
Bra035956.1-P	Field mustard	nucleus	20.45	26.97
Bra013003.1-P	Field mustard	nucleus	22.16	26.53
Bra012804.1-P	Field mustard	nucleus	17.9	26.14
Bra029352.1-P	Field mustard	nucleus	20.45	25.9
Bra017906.1-P	Field mustard	nucleus	18.47	25.69
Bra006923.1-P	Field mustard	nucleus	17.61	25.62
Bra010136.1-P	Field mustard	nucleus	26.7	25.54
Bra035873.1-P	Field mustard	nucleus	24.43	25.29
Bra012277.1-P	Field mustard	nucleus	18.75	25.29
Bra020261.1-P	Field mustard	nucleus	16.48	24.37
Bra002504.1-P	Field mustard	nucleus	17.61	24.03
Bra000008.1-P	Field mustard	nucleus	19.6	23.55
Bra035696.1-P	Field mustard	nucleus	16.76	23.05
Bra007156.1-P	Field mustard	nucleus	21.31	22.94
Bra005181.1-P	Field mustard	nucleus	21.02	22.77
Bra017171.1-P	Field mustard	nucleus	19.89	22.65
Bra006675.1-P	Field mustard	nucleus	17.61	22.38
Bra014752.1-P	Field mustard	nucleus	21.88	22.0
Bra030696.1-P	Field mustard	nucleus	20.74	21.86
Bra035667.1-P	Field mustard	nucleus	20.74	21.22
Bra031588.1-P	Field mustard	nucleus	17.9	19.87
Bra031853.1-P	Field mustard	nucleus	17.05	19.74
Bra010884.1-P	Field mustard	nucleus	16.48	19.66
Bra037822.1-P	Field mustard	nucleus	15.62	19.37
Bra032891.1-P	Field mustard	nucleus	16.19	19.19
Bra030089.1-P	Field mustard	nucleus	15.62	18.46
Bra024399.1-P	Field mustard	nucleus	15.91	18.3
Bra005725.1-P	Field mustard	nucleus	20.74	18.11
Bra028872.1-P	Field mustard	nucleus	20.74	17.98
Bra009588.1-P	Field mustard	plastid	4.55	8.99

Protein Annotations

MapMan:15.5.1.5	EnsemblPlantsGene:Bra010548	EnsemblPlants:Bra010548.1	EnsemblPlants:Bra010548.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	UniProt:M4D248	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	PANTHER:PTHR31992:SF42	UniParc:UPI0002545FFD	InterPro:Znf_Dof	SEG:seg	:

Description

AT4G24060 (E=1e-116) | Dof-type zinc finger domain-containing protein

Coordinates

chrA08:+:15096663..15098117

Molecular Weight (calculated)

38405.3 Da

IEP (calculated)

8.195

GRAVY (calculated)

-0.788

Length

352 amino acids

Sequence
(BLAST)

001: MDTAQWPQEI VVKPLEEIVT NTCLTPRASQ PQPPPSVGAA GVAERKTRPE KDQAINCPRC NSVNTKFCYY NNYSLTQPRF FCKGCRRYWT EGGSLRNIPV
101: GGGSRKNKRS HSSSISSSLD ISKNHSDSTQ PATKKHHSDH HPHHHLMSIS QQGLTGQNPK IFETTQQNLK LGFPPHGLIR TNFTDLIHNT GNNNTSTNNP
201: FIGSSCSATS ALATSPLDLI RNNNCNNRNT SNSSFMGFPV HNQGPTSEGF SMQDHYKPSN SNTTLLGFSL DHHHDNSEFH GGFQGGEGRE VGDDVNGRHL
301: FPFEDLKLPV SSSSSATINI DVNDHQKRAS GGDAAATSGG YWTGMLSGGS WC

Best Arabidopsis Sequence Match ( AT4G24060.1 )
(BLAST)

001: MDTAQWPQEI VVKPLEEIVT NTCPKPQPQP LQPQQPPSVG GERKARPEKD QAVNCPRCNS TNTKFCYYNN YSLTQPRYFC KGCRRYWTEG GSLRNIPVGG
101: GSRKNKRSHS SSSDISNNHS DSTQPATKKH LSDHHHHLMS MSQQGLTGQN PKFLETTQQD LNLGFSPHGM IRTNFTDLIH NIGNNTNKSN NNNNPLIVSS
201: CSAMATSSLD LIRNNSNNGN SSNSSFMGFP VHNQDPASGG FSMQDHYKPC NTNTTLLGFS LDHHHNNGFH GGFQGGEEGG EGGDDVNGRH LFPFEDLKLP
301: VSSSSATINV DINEHQKRGS GSDAAATSGG YWTGMLSGGS WC

Arabidopsis Description

DOF4.6Dof zinc finger protein DOF4.6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.