Factsheet for Bra035667.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005398.1-P
Bra021926.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28810.1	Bra005398.1-P	AT2G34710.1	21245844
AT2G28810.1	Bra021926.1-P	AT2G34710.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31735	Canola	nucleus	99.42	99.42
CDX77212	Canola	nucleus	95.93	97.06
AT2G28810.1	Thale cress	nucleus	81.1	82.06
Bra030696.1-P	Field mustard	nucleus	56.69	58.38
Bra031588.1-P	Field mustard	nucleus	51.74	56.15
KRH24808	Soybean	nucleus	38.08	42.67
Bra009587.1-P	Field mustard	nucleus	21.51	41.81
VIT_06s0004g04520.t01	Wine grape	nucleus	38.08	40.94
KRH29808	Soybean	nucleus, plastid	36.63	37.61
KRH10276	Soybean	nucleus	32.27	36.51
KRH23056	Soybean	nucleus	27.91	35.69
PGSC0003DMT400060216	Potato	nucleus	30.81	35.1
Solyc05g054510.1.1	Tomato	nucleus	27.91	32.21
Bra000008.1-P	Field mustard	nucleus	27.33	32.08
Bra017171.1-P	Field mustard	nucleus	28.2	31.39
Bra014752.1-P	Field mustard	nucleus	31.69	31.14
Bra005181.1-P	Field mustard	nucleus	29.36	31.08
Bra007156.1-P	Field mustard	nucleus	28.78	30.28
Bra005725.1-P	Field mustard	nucleus	34.88	29.78
Bra028872.1-P	Field mustard	nucleus	34.01	28.82
Bra037822.1-P	Field mustard	nucleus	20.64	25.0
Bra035956.1-P	Field mustard	nucleus	18.9	24.34
Bra020261.1-P	Field mustard	nucleus	16.57	23.95
Bra032891.1-P	Field mustard	nucleus	20.64	23.91
Bra010884.1-P	Field mustard	nucleus	20.35	23.73
Bra031853.1-P	Field mustard	nucleus	20.93	23.68
Bra012804.1-P	Field mustard	nucleus	16.28	23.24
Bra013003.1-P	Field mustard	nucleus	19.77	23.13
Bra029352.1-P	Field mustard	nucleus	18.6	23.02
Bra002504.1-P	Field mustard	nucleus	17.15	22.87
Bra030089.1-P	Field mustard	nucleus	19.77	22.82
Bra006923.1-P	Field mustard	nucleus	15.99	22.73
Bra024399.1-P	Field mustard	nucleus	20.06	22.55
Bra006675.1-P	Field mustard	nucleus	16.86	20.94
Bra010548.1-P	Field mustard	nucleus	21.22	20.74
Bra035696.1-P	Field mustard	nucleus	15.41	20.7
Bra013758.1-P	Field mustard	nucleus	20.06	20.54
Bra019247.1-P	Field mustard	nucleus	20.35	20.41
Bra037401.1-P	Field mustard	nucleus	17.44	20.13
Bra035873.1-P	Field mustard	nucleus	19.48	19.71
Bra014418.1-P	Field mustard	nucleus	17.73	19.68
Bra017906.1-P	Field mustard	nucleus	14.24	19.37
Bra004525.1-P	Field mustard	nucleus	19.77	19.32
Bra027722.1-P	Field mustard	nucleus	18.02	19.14
Bra009588.1-P	Field mustard	plastid	9.88	19.1
Bra012277.1-P	Field mustard	nucleus	14.24	18.77
Bra000429.1-P	Field mustard	nucleus	19.48	18.16
Bra010136.1-P	Field mustard	nucleus	19.19	17.93
Bra039272.1-P	Field mustard	nucleus, plastid	18.6	17.78

Protein Annotations

MapMan:15.5.1.5	EnsemblPlantsGene:Bra035667	EnsemblPlants:Bra035667.1	EnsemblPlants:Bra035667.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	GO:GO:0044212	InterPro:IPR003851	UniProt:M4F3L7	PFAM:PD007478	PFAM:PF02701
ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF66	UniParc:UPI0002544048	InterPro:Znf_Dof
SEG:seg	:	:	:	:	:

Description

AT2G28810 (E=1e-112) | Dof-type zinc finger domain-containing protein

Coordinates

chrA04:+:12967906..12969298

Molecular Weight (calculated)

36924.6 Da

IEP (calculated)

9.311

GRAVY (calculated)

-0.706

Length

344 amino acids

Sequence
(BLAST)

001: MVFSSVSSFL DPPINWPQSA NSNNHPNHPH QLHLQETGNL VGGHQVHSHQ FPPQNPNPNH NHVDTTADTT VDPAGFSGPA TERARLAKNS HPPEGPLNCP
101: RCNSANTKFC YFNNYNLTQP RHFCKACRRY WTQGGALRNV PVGGGCRRNK KAKPGNSKSS ASSQNKQSTS MVNASSPTTN SNIQLRTNSQ LPFLPTLQNL
201: TQLGGIGLNL AAINGNSVGN GNTSSSFFND LGFFHGANTS GPVMANNNNN ESNIMTSLGS ASHFAMLDRS MGLYSFPNEG NMVLSSSTAS RVSQTAPVKM
301: EETHVGNISR PDSGLTSAGN QSNQYWPGLS LPGSSSNDQQ QHLM

Best Arabidopsis Sequence Match ( AT2G28810.1 )
(BLAST)

001: MVFSSVSSFL DPPINWPQSA NPNNHPHHHQ LQENGSLVSG HHQVLSHHFP QNPNPNHHHV ETAAATTVDP SSLNGQAAER ARLAKNSQPP EGALKCPRCD
101: SANTKFCYFN NYNLTQPRHF CKACRRYWTR GGALRNVPVG GGCRRNKKGK SGNSKSSSSS QNKQSTSMVN ATSPTNTSNV QLQTNSQFPF LPTLQNLTQL
201: GGIGLNLAAI NGNNGGNGNT SSSFLNDLGF FHGGNTSGPV MGNNNENNLM TSLGSSSHFA LFDRTMGLYN FPNEVNMGLS SIGATRVSQT AQVKMEDNHL
301: GNISRPVSGL TSPGNQSNQY WTGQGLPGSS SNDHHHQHLM

Arabidopsis Description

DOF2.2Dof zinc finger protein DOF2.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZV33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.