CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11775
KRH36781
KRH43001
KRH59117

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28810.1	KRH11775	AT2G34710.1	21245844
AT2G28810.1	KRH36781	AT2G34710.1	21245844
AT2G28810.1	KRH43001	AT2G34710.1	21245844
AT2G28810.1	KRH59117	AT2G34710.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23056	Soybean	nucleus	70.07	79.18
KRH24808	Soybean	nucleus	59.21	58.63
VIT_06s0004g04520.t01	Wine grape	nucleus	53.29	50.62
KRH29808	Soybean	nucleus, plastid	54.28	49.25
PGSC0003DMT400060216	Potato	nucleus	39.47	39.74
Solyc05g054510.1.1	Tomato	nucleus	38.16	38.93
KRH70477	Soybean	nucleus	46.38	38.01
KRH46814	Soybean	nucleus	45.72	37.87
KRG99864	Soybean	nucleus	45.07	37.74
KRH01640	Soybean	nucleus	44.74	37.47
Bra030696.1-P	Field mustard	nucleus	37.17	33.83
CDX95139	Canola	nucleus	37.17	33.63
CDY15624	Canola	nucleus	36.84	33.53
AT2G28810.1	Thale cress	nucleus	37.5	33.53
CDY61965	Canola	nucleus	34.21	33.44
Bra031588.1-P	Field mustard	nucleus	34.87	33.44
AT1G07640.3	Thale cress	nucleus	37.17	33.33
CDY06274	Canola	nucleus	34.21	33.12
Bra035667.1-P	Field mustard	nucleus	36.51	32.27
CDY31735	Canola	nucleus	36.51	32.27
CDX77212	Canola	nucleus	35.53	31.76
KRG96269	Soybean	nucleus	17.43	30.81
KRH53547	Soybean	nucleus	20.72	30.58
KRH21495	Soybean	nucleus	26.97	29.5
KRH24943	Soybean	nucleus	29.28	29.18
KRG89059	Soybean	nucleus	28.62	28.06
KRH10827	Soybean	nucleus	25.66	27.37
KRG97209	Soybean	nucleus	22.04	26.59
KRH10907	Soybean	nucleus	30.26	26.06
KRH50082	Soybean	nucleus	24.34	25.69
KRH21402	Soybean	nucleus	29.61	25.21
KRG96256	Soybean	nucleus	22.37	25.09
KRH06442	Soybean	nucleus	22.7	25.0
KRH50000	Soybean	nucleus	27.3	25.0
KRH22943	Soybean	nucleus	23.36	24.91
KRH10402	Soybean	nucleus	23.36	24.91
KRH20497	Soybean	nucleus	27.3	24.7
KRH56758	Soybean	nucleus	23.68	24.66
KRH74458	Soybean	nucleus	26.64	24.04
KRH64383	Soybean	nucleus	23.36	23.91
KRH68931	Soybean	nucleus	23.03	23.89
KRH03180	Soybean	nucleus	23.36	23.67
KRH50083	Soybean	nucleus	26.97	23.56
KRH64521	Soybean	nucleus	22.37	23.53
KRH47883	Soybean	nucleus	22.04	23.34
KRH53419	Soybean	nucleus	22.04	23.18
KRH72174	Soybean	nucleus	22.04	22.95
KRH39485	Soybean	nucleus	25.66	22.81
KRH20416	Soybean	nucleus	26.32	22.66
KRH20417	Soybean	nucleus	24.01	22.26
KRH54755	Soybean	nucleus	21.38	21.45
KRH76935	Soybean	nucleus	23.68	21.43
KRH28526	Soybean	nucleus	23.68	21.24
KRH57071	Soybean	nucleus	23.03	21.21
KRH03289	Soybean	nucleus	23.03	21.21
KRG92523	Soybean	nucleus	21.05	21.19
KRH21403	Soybean	nucleus	22.04	21.14
KRH10904	Soybean	nucleus	21.71	21.09
KRH32857	Soybean	extracellular, vacuole	22.7	20.54
KRH04709	Soybean	nucleus	23.36	20.17
KRH54395	Soybean	nucleus	22.7	19.55
KRH63537	Soybean	nucleus	22.04	19.48
KRH34272	Soybean	nucleus	21.38	19.35
KRG99513	Soybean	nucleus	23.36	19.24
KRH63162	Soybean	nucleus	21.05	18.77
KRH45516	Soybean	nucleus	24.34	18.36

Protein Annotations

EntrezGene:100775899	MapMan:15.5.1.5	EMBL:ACUP02009129	EnsemblPlantsGene:GLYMA_15G039300	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
UniProt:I1MDG2	InterPro:IPR003851	EnsemblPlants:KRH10276	ProteinID:KRH10276	ProteinID:KRH10276.1	PFAM:PD007478
PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF66	UniParc:UPI000233B04A
InterPro:Znf_Dof	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:3099695..3101458

Molecular Weight (calculated)

33104.8 Da

IEP (calculated)

10.093

GRAVY (calculated)

-0.591

Length

304 amino acids

Sequence
(BLAST)

001: MVFSSIPVYS DPPNWQQQQQ NQHQANGINS PQLLSPLPQP PQAPHVGVEA GQTRSGPMAD RAKIPAQEGV LKCPRCESTN TKFCYFNNYS LSQPRHFCKT
101: CRRYWTRGGA LRNVPVGGGC RRNKKHKRSR SKSPVSTDKP SLPNSTSAIP ELIGRFPQPF IASLQSMNRY GVGNTGVNLR EIQAQNGSQM GFQIGGHGNG
201: TSSVATAGGG VEQWRFQQFP FLNGFESTLA VSNSYPFQSE SVEGLVGDIA ASSRATQLPA RVKMEYNGGL NLSRSPLSVS ENSNHYYSWT DLSGLVSSSA
301: SHLL

Best Arabidopsis Sequence Match ( AT3G55370.1 )
(BLAST)

001: MVFSSLPVNQ FDSQNWQQQG NQHQLECVTT DQNPNNYLRQ LSSPPTSQVA GSSQARVNSM VERARIAKVP LPEAALNCPR CDSTNTKFCY FNNYSLTQPR
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGGVSATQT RNVKAEENDQ DRGRDGDGVN NLSRNFLGNI NINSGRNEEY
301: TSWGGNSSWT GFTSNNSTGH LSF

Arabidopsis Description

OBP3OBF-binding protein 3 [Source:UniProtKB/TrEMBL;Acc:F4IWU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.