Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 3
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G28810.1 | KRH11775 | AT2G34710.1 | 21245844 |
| AT2G28810.1 | KRH36781 | AT2G34710.1 | 21245844 |
| AT2G28810.1 | KRH43001 | AT2G34710.1 | 21245844 |
| AT2G28810.1 | KRH59117 | AT2G34710.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH29808 | Soybean | nucleus, plastid | 88.6 | 81.19 |
| KRH10276 | Soybean | nucleus | 58.63 | 59.21 |
| KRH23056 | Soybean | nucleus | 48.53 | 55.39 |
| VIT_06s0004g04520.t01 | Wine grape | nucleus | 57.0 | 54.69 |
| KRG99864 | Soybean | nucleus | 51.14 | 43.25 |
| KRH46814 | Soybean | nucleus | 51.14 | 42.78 |
| PGSC0003DMT400060216 | Potato | nucleus | 41.69 | 42.38 |
| KRH70477 | Soybean | nucleus | 49.51 | 40.97 |
| Solyc05g054510.1.1 | Tomato | nucleus | 39.41 | 40.6 |
| Bra030696.1-P | Field mustard | nucleus | 43.65 | 40.12 |
| CDY15624 | Canola | nucleus | 43.32 | 39.82 |
| KRH01640 | Soybean | nucleus | 46.91 | 39.67 |
| AT2G28810.1 | Thale cress | nucleus | 43.32 | 39.12 |
| Bra031588.1-P | Field mustard | nucleus | 40.07 | 38.8 |
| CDX95139 | Canola | nucleus | 42.35 | 38.69 |
| CDY61965 | Canola | nucleus | 39.09 | 38.59 |
| CDY06274 | Canola | nucleus | 39.41 | 38.53 |
| CDX77212 | Canola | nucleus | 42.67 | 38.53 |
| Bra035667.1-P | Field mustard | nucleus | 42.67 | 38.08 |
| CDY31735 | Canola | nucleus | 42.67 | 38.08 |
| AT1G07640.3 | Thale cress | nucleus | 42.02 | 38.05 |
| KRH53547 | Soybean | nucleus | 21.5 | 32.04 |
| KRH24943 | Soybean | nucleus | 28.99 | 29.18 |
| KRG96269 | Soybean | nucleus | 16.29 | 29.07 |
| KRH21495 | Soybean | nucleus | 25.73 | 28.42 |
| KRH56758 | Soybean | nucleus | 26.71 | 28.08 |
| KRG89059 | Soybean | nucleus | 28.01 | 27.74 |
| KRH22943 | Soybean | nucleus | 25.73 | 27.72 |
| KRH03180 | Soybean | nucleus | 26.71 | 27.33 |
| KRH10827 | Soybean | nucleus | 25.08 | 27.02 |
| KRH10402 | Soybean | nucleus | 24.76 | 26.67 |
| KRH74458 | Soybean | nucleus | 28.66 | 26.11 |
| KRG97209 | Soybean | nucleus | 21.17 | 25.79 |
| KRH10907 | Soybean | nucleus | 29.32 | 25.5 |
| KRH39485 | Soybean | nucleus | 28.34 | 25.44 |
| KRH21402 | Soybean | nucleus | 29.32 | 25.21 |
| KRH54755 | Soybean | nucleus | 24.76 | 25.08 |
| KRH50082 | Soybean | nucleus | 23.45 | 25.0 |
| KRH64383 | Soybean | nucleus | 24.1 | 24.92 |
| KRH06442 | Soybean | nucleus | 21.82 | 24.28 |
| KRH50083 | Soybean | nucleus | 27.04 | 23.85 |
| KRH50000 | Soybean | nucleus | 25.73 | 23.8 |
| KRH47883 | Soybean | nucleus | 21.82 | 23.34 |
| KRH20497 | Soybean | nucleus | 25.41 | 23.21 |
| KRH64521 | Soybean | nucleus | 21.82 | 23.18 |
| KRH20416 | Soybean | nucleus | 26.38 | 22.95 |
| KRH68931 | Soybean | nucleus | 21.82 | 22.87 |
| KRH57071 | Soybean | nucleus | 24.43 | 22.73 |
| KRG92523 | Soybean | nucleus | 22.15 | 22.52 |
| KRH53419 | Soybean | nucleus | 21.17 | 22.49 |
| KRH03289 | Soybean | nucleus | 24.1 | 22.42 |
| KRH21403 | Soybean | nucleus | 22.8 | 22.08 |
| KRH76935 | Soybean | nucleus | 24.1 | 22.02 |
| KRH20417 | Soybean | nucleus | 23.45 | 21.95 |
| KRH72174 | Soybean | nucleus | 20.52 | 21.58 |
| KRH28526 | Soybean | nucleus | 23.78 | 21.53 |
| KRH63162 | Soybean | nucleus | 23.78 | 21.41 |
| KRH10904 | Soybean | nucleus | 21.82 | 21.41 |
| KRH63537 | Soybean | nucleus | 23.78 | 21.22 |
| KRG96256 | Soybean | nucleus | 18.57 | 21.03 |
| KRH04709 | Soybean | nucleus | 23.78 | 20.74 |
| KRG99513 | Soybean | nucleus | 24.76 | 20.6 |
| KRH34272 | Soybean | nucleus | 22.48 | 20.54 |
| KRH54395 | Soybean | nucleus | 23.45 | 20.4 |
| KRH45516 | Soybean | nucleus | 25.41 | 19.35 |
| KRH32857 | Soybean | extracellular, vacuole | 21.17 | 19.35 |
Protein Annotations
| EntrezGene:100816635 | MapMan:15.5.1.5 | EMBL:ACUP02007186 | EnsemblPlantsGene:GLYMA_12G063800 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR003851 | UniProt:K7LTC4 | EnsemblPlants:KRH24808 | ProteinID:KRH24808 | ProteinID:KRH24808.1 | PFAM:PD007478 |
| PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF61 | UniParc:UPI000233D2F0 |
| InterPro:Znf_Dof | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr12:-:4680402..4682246
Molecular Weight (calculated)
33058.7 Da
IEP (calculated)
9.644
GRAVY (calculated)
-0.638
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFSSIPVFV DPPNWQQQPN HPQASNNGGD NSQLLPPLPP HQPHVGGSVG SIRPGSMADR ARLAKIPPPE AALKCPRCDS TNTKFCYFNN YSLSQPRHFC
101: KTCRRYWTSG GALRNVPVGG GCRRNKKNKR SRSKSPASSE KQTLSGSTSA TPSGGTTHEL VGQLPQPPNL PFMASLQNLN RYAVGNMGLG LREIHGQNEN
201: MGFQIGNSSA AGGGMDQWRI QQVPFLNGFE STSAGSYPFQ NEGIETPSGF GGDIATNSRV SQMPSVKMEE SGALNLSRST LNVSENNQYY SWTDMSGLAS
301: SSATHLL
101: KTCRRYWTSG GALRNVPVGG GCRRNKKNKR SRSKSPASSE KQTLSGSTSA TPSGGTTHEL VGQLPQPPNL PFMASLQNLN RYAVGNMGLG LREIHGQNEN
201: MGFQIGNSSA AGGGMDQWRI QQVPFLNGFE STSAGSYPFQ NEGIETPSGF GGDIATNSRV SQMPSVKMEE SGALNLSRST LNVSENNQYY SWTDMSGLAS
301: SSATHLL
001: MVFSSLPVNQ FDSQNWQQQG NQHQLECVTT DQNPNNYLRQ LSSPPTSQVA GSSQARVNSM VERARIAKVP LPEAALNCPR CDSTNTKFCY FNNYSLTQPR
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGGVSATQT RNVKAEENDQ DRGRDGDGVN NLSRNFLGNI NINSGRNEEY
301: TSWGGNSSWT GFTSNNSTGH LSF
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGGVSATQT RNVKAEENDQ DRGRDGDGVN NLSRNFLGNI NINSGRNEEY
301: TSWGGNSSWT GFTSNNSTGH LSF
Arabidopsis Description
OBP3OBF-binding protein 3 [Source:UniProtKB/TrEMBL;Acc:F4IWU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.