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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 3
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX84286
CDY31635
CDY43661

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra035667.1-P Field mustard nucleus 97.06 95.93
CDY31735 Canola nucleus 97.06 95.93
AT2G28810.1 Thale cress nucleus 80.0 80.0
CDY15624 Canola nucleus 56.76 57.78
CDY06274 Canola nucleus 52.65 57.01
CDX95139 Canola nucleus 55.88 56.55
CDY61965 Canola nucleus 51.47 56.27
CDY70840 Canola nucleus 16.47 49.56
KRH24808 Soybean nucleus 38.53 42.67
VIT_06s0004g04520.t01 Wine grape nucleus 38.53 40.94
CDY07781 Canola nucleus 24.41 38.78
KRH29808 Soybean nucleus, plastid 37.06 37.61
KRH10276 Soybean nucleus 31.76 35.53
KRH23056 Soybean nucleus 27.94 35.32
PGSC0003DMT400060216 Potato nucleus 31.18 35.1
CDX73385 Canola nucleus 29.71 33.44
CDY40358 Canola nucleus 32.65 33.33
CDX79743 Canola nucleus 28.24 32.76
Solyc05g054510.1.1 Tomato nucleus 28.24 32.21
CDY69145 Canola nucleus, plastid 29.71 32.06
CDY65260 Canola nucleus 29.12 32.04
CDX93365 Canola nucleus 28.82 31.72
CDX74947 Canola nucleus 30.0 31.38
CDY70704 Canola nucleus 33.53 31.23
CDX91370 Canola nucleus 29.71 31.08
CDY08775 Canola nucleus 17.65 30.61
CDY55549 Canola nucleus 35.0 29.6
CDY40213 Canola nucleus 30.88 29.58
CDY55422 Canola nucleus 34.41 29.18
CDX80822 Canola nucleus 34.71 29.06
CDY04855 Canola nucleus 34.41 28.82
CDX76102 Canola nucleus 31.76 28.35
CDX87189 Canola nucleus 19.71 26.8
CDX81292 Canola nucleus 21.18 25.53
CDY70312 Canola nucleus 21.18 25.35
CDY16836 Canola nucleus 19.12 24.34
CDY33948 Canola nucleus 21.47 24.17
CDY53379 Canola nucleus 15.29 23.74
CDY40813 Canola nucleus 19.71 23.67
CDY70666 Canola nucleus 20.59 23.57
CDY72049 Canola nucleus 20.59 23.57
CDY37834 Canola nucleus 20.88 23.36
CDX80191 Canola nucleus 17.65 23.35
CDY29082 Canola nucleus 16.47 23.33
CDY31568 Canola nucleus 17.65 23.26
CDY09221 Canola nucleus 17.65 23.26
CDX90602 Canola nucleus 16.47 23.24
CDY70838 Canola nucleus 20.88 23.2
CDY42836 Canola nucleus 19.41 23.08
CDX71050 Canola nucleus 17.06 22.92
CDX78095 Canola nucleus 16.18 22.73
CDY59600 Canola nucleus 16.18 22.54
CDY02191 Canola nucleus 19.41 22.45
CDY07156 Canola nucleus 18.24 22.22
CDX90142 Canola nucleus 20.29 21.84
CDY35729 Canola nucleus 19.12 21.74
CDY15678 Canola nucleus 20.59 21.41
CDY35454 Canola nucleus 21.47 21.34
CDX88742 Canola nucleus 17.35 21.3
CDY72657 Canola nucleus 18.24 21.23
CDY51722 Canola nucleus 17.35 21.22
CDY66590 Canola nucleus 20.29 21.1
CDY03494 Canola nucleus 20.88 20.64
CDY71684 Canola nucleus 20.29 20.6
CDY71763 Canola nucleus 20.59 20.41
CDX92613 Canola nucleus 20.59 20.41
CDX77184 Canola nucleus 15.29 20.31
CDX80030 Canola nucleus 21.18 19.78
CDY16754 Canola nucleus 19.71 19.71
CDX87270 Canola nucleus 19.71 19.65
CDY41539 Canola nucleus 20.88 19.4
CDX86775 Canola nucleus 17.65 19.29
CDY04620 Canola nucleus 14.41 19.29
CDY64622 Canola nucleus 18.24 19.2
CDX71704 Canola nucleus 18.82 19.1
CDY08392 Canola nucleus 18.82 18.93
CDY50231 Canola nucleus 13.82 18.58
CDY00373 Canola nucleus 14.12 18.46
CDX95706 Canola nucleus 20.0 18.43
CDY27314 Canola nucleus 19.41 18.33
CDY57876 Canola nucleus 19.41 18.28
CDY61727 Canola nucleus 20.0 18.18
CDX83357 Canola nucleus 20.0 18.18
CDX89134 Canola extracellular, vacuole 18.53 18.1
CDX84369 Canola nucleus 19.71 18.06
CDY61064 Canola nucleus 13.82 18.01
CDY00341 Canola nucleus 19.41 17.93
CDY24798 Canola nucleus 21.76 16.34
CDY08776 Canola nucleus 2.94 11.63
Protein Annotations
MapMan:15.5.1.5GO:A0A078CKF0EnsemblPlants:CDX77212ProteinID:CDX77212ProteinID:CDX77212.1GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0006139GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00127875001InterPro:IPR003851PFAM:PD007478
PFAM:PF02701ScanProsite:PS01361PFscan:PS50884PANTHER:PTHR31992PANTHER:PTHR31992:SF66UniParc:UPI0004EE7403
InterPro:Znf_DofSEG:seg::::
Description
BnaC04g40070D
Coordinates
chrLK031809:+:2144464..2146182
Molecular Weight (calculated)
36501.2 Da
IEP (calculated)
9.768
GRAVY (calculated)
-0.706
Length
340 amino acids
Sequence
(BLAST)
001: MVFSSVSSFL DPPINWPQSA NSNNHPNHPH QLHPQETGNL VGGHRVHSHQ FPPQNPNPNH NHVDTTVDPA GLSGSVTERA RLAKNSHPPE GPLNCPRCNS
101: ANTKFCYFNN YNLTQPRHFC KACRRYWTQG GALRNVPVGG GCRRNKKAKP GNSKSSASSQ NKQSTSMVNA PSPTTNSNIQ LRTNSQLPFL PTLQNLTQLG
201: GIGLNLAAIN GNSVGNGNTS SSFFNDLGFF HGANTSGPVM ANNNNSESNI MTSLGSANHF AMLDRSMGLY SFPNEGNMVL SSSTASRVSQ TAPVKMEETH
301: VGSISRPDSG LSSAGNQSNQ YWPGLSLPGS SSNDQQQHLM
Best Arabidopsis Sequence Match ( AT2G28810.1 )
(BLAST)
001: MVFSSVSSFL DPPINWPQSA NPNNHPHHHQ LQENGSLVSG HHQVLSHHFP QNPNPNHHHV ETAAATTVDP SSLNGQAAER ARLAKNSQPP EGALKCPRCD
101: SANTKFCYFN NYNLTQPRHF CKACRRYWTR GGALRNVPVG GGCRRNKKGK SGNSKSSSSS QNKQSTSMVN ATSPTNTSNV QLQTNSQFPF LPTLQNLTQL
201: GGIGLNLAAI NGNNGGNGNT SSSFLNDLGF FHGGNTSGPV MGNNNENNLM TSLGSSSHFA LFDRTMGLYN FPNEVNMGLS SIGATRVSQT AQVKMEDNHL
301: GNISRPVSGL TSPGNQSNQY WTGQGLPGSS SNDHHHQHLM
Arabidopsis Description
DOF2.2Dof zinc finger protein DOF2.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZV33]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.