Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09221 | Canola | nucleus | 88.14 | 86.43 |
| CDX88742 | Canola | nucleus | 91.3 | 83.39 |
| CDY31568 | Canola | nucleus | 84.98 | 83.33 |
| AT5G60200.1 | Thale cress | nucleus | 83.79 | 82.49 |
| CDX80191 | Canola | nucleus | 83.4 | 82.1 |
| AT3G45610.1 | Thale cress | nucleus | 63.64 | 65.71 |
| CDY70840 | Canola | nucleus | 21.34 | 47.79 |
| CDY53379 | Canola | nucleus | 26.88 | 31.05 |
| CDX77184 | Canola | nucleus | 26.88 | 26.56 |
| CDY08775 | Canola | nucleus | 20.55 | 26.53 |
| CDY07781 | Canola | nucleus | 20.95 | 24.77 |
| CDY29082 | Canola | nucleus | 22.92 | 24.17 |
| CDX90602 | Canola | nucleus | 22.92 | 24.07 |
| CDX87189 | Canola | nucleus | 23.72 | 24.0 |
| CDY51722 | Canola | nucleus | 26.09 | 23.74 |
| CDY50231 | Canola | nucleus | 23.72 | 23.72 |
| CDY07156 | Canola | nucleus | 26.09 | 23.66 |
| CDY04620 | Canola | nucleus | 23.72 | 23.62 |
| CDX78095 | Canola | nucleus | 22.53 | 23.55 |
| CDY59600 | Canola | nucleus | 22.13 | 22.95 |
| CDY00373 | Canola | nucleus | 23.32 | 22.69 |
| CDY61064 | Canola | nucleus | 22.92 | 22.22 |
| KRH50082 | Soybean | nucleus | 25.3 | 22.22 |
| CDY16836 | Canola | nucleus | 23.32 | 22.1 |
| GSMUA_Achr1P17670_001 | Banana | nucleus | 17.79 | 20.74 |
| CDY02191 | Canola | nucleus | 23.72 | 20.41 |
| CDY72657 | Canola | nucleus | 23.32 | 20.21 |
| CDY40813 | Canola | nucleus | 22.53 | 20.14 |
| CDY35729 | Canola | nucleus | 23.72 | 20.07 |
| CDX86775 | Canola | nucleus | 24.51 | 19.94 |
| CDY70666 | Canola | nucleus | 23.32 | 19.87 |
| CDY64622 | Canola | nucleus | 25.3 | 19.81 |
| VIT_00s0652g00010.t01 | Wine grape | nucleus | 22.92 | 19.66 |
| CDY42836 | Canola | nucleus | 22.13 | 19.58 |
| CDY33948 | Canola | nucleus | 23.32 | 19.54 |
| CDX73385 | Canola | nucleus | 23.32 | 19.54 |
| CDY72049 | Canola | nucleus | 22.92 | 19.53 |
| KRH20417 | Soybean | nucleus | 25.3 | 19.51 |
| CDY16754 | Canola | nucleus | 26.09 | 19.41 |
| CDY37834 | Canola | nucleus | 23.32 | 19.41 |
| CDY71684 | Canola | nucleus | 25.69 | 19.4 |
| CDX71704 | Canola | nucleus | 25.69 | 19.4 |
| CDX87270 | Canola | nucleus | 26.09 | 19.35 |
| CDY70838 | Canola | nucleus | 23.32 | 19.28 |
| CDY03494 | Canola | nucleus | 26.09 | 19.19 |
| CDX84369 | Canola | nucleus | 28.06 | 19.14 |
| CDX79743 | Canola | nucleus | 22.13 | 19.11 |
| CDY69145 | Canola | nucleus, plastid | 23.72 | 19.05 |
| CDY00341 | Canola | nucleus | 27.67 | 19.02 |
| CDY35454 | Canola | nucleus | 25.69 | 19.01 |
| CDX90142 | Canola | nucleus | 23.72 | 18.99 |
| CDY71763 | Canola | nucleus | 25.69 | 18.95 |
| CDX92613 | Canola | nucleus | 25.69 | 18.95 |
| CDY08392 | Canola | nucleus | 25.3 | 18.93 |
| Zm00001d029512_P001 | Maize | nucleus | 26.09 | 18.8 |
| CDX95706 | Canola | nucleus | 27.27 | 18.7 |
| CDY70312 | Canola | nucleus | 20.95 | 18.66 |
| CDX83357 | Canola | nucleus | 27.27 | 18.45 |
| CDX93365 | Canola | nucleus | 22.53 | 18.45 |
| CDX89134 | Canola | extracellular, vacuole | 25.3 | 18.39 |
| CDY40358 | Canola | nucleus | 24.11 | 18.32 |
| CDY65260 | Canola | nucleus | 22.13 | 18.12 |
| CDY66590 | Canola | nucleus | 23.32 | 18.04 |
| CDY41539 | Canola | nucleus | 26.09 | 18.03 |
| CDY57876 | Canola | nucleus | 25.69 | 18.01 |
| CDY15624 | Canola | nucleus | 23.72 | 17.96 |
| CDX80030 | Canola | nucleus | 25.69 | 17.86 |
| CDX91370 | Canola | nucleus | 22.92 | 17.85 |
| CDX74947 | Canola | nucleus | 22.92 | 17.85 |
| CDY15678 | Canola | nucleus | 22.92 | 17.74 |
| CDY61727 | Canola | nucleus | 26.09 | 17.65 |
| Solyc02g078620.1.1 | Tomato | nucleus | 19.76 | 17.61 |
| CDY27314 | Canola | nucleus | 24.9 | 17.5 |
| GSMUA_Achr5P12010_001 | Banana | nucleus | 24.51 | 17.46 |
| CDY70704 | Canola | nucleus | 24.9 | 17.26 |
| CDX77212 | Canola | nucleus | 22.92 | 17.06 |
| CDX81292 | Canola | nucleus | 18.97 | 17.02 |
| CDX95139 | Canola | nucleus | 22.53 | 16.96 |
| CDY40213 | Canola | nucleus | 23.72 | 16.9 |
| CDY31735 | Canola | nucleus | 22.92 | 16.86 |
| CDY61965 | Canola | nucleus | 20.55 | 16.72 |
| CDX76102 | Canola | nucleus | 24.11 | 16.01 |
| CDY06274 | Canola | nucleus | 19.76 | 15.92 |
| CDY55549 | Canola | nucleus | 24.51 | 15.42 |
| CDX80822 | Canola | nucleus | 24.51 | 15.27 |
| CDY55422 | Canola | nucleus | 24.11 | 15.21 |
| CDY04855 | Canola | nucleus | 23.72 | 14.78 |
| CDY24798 | Canola | nucleus | 24.9 | 13.91 |
| CDY08776 | Canola | nucleus | 2.77 | 8.14 |
| Os03t0276300-00 | Rice | cytosol | 0.79 | 1.44 |
Protein Annotations
| MapMan:15.5.1.5 | GO:A0A078C2H4 | EnsemblPlants:CDX71050 | ProteinID:CDX71050 | ProteinID:CDX71050.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00140994001 | InterPro:IPR003851 | PFAM:PD007478 |
| PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF78 | UniParc:UPI0004EDB065 |
| InterPro:Znf_Dof | : | : | : | : | : |
Description
BnaC03g11340D
Coordinates
chrLK031791:-:3436832..3438020
Molecular Weight (calculated)
27739.5 Da
IEP (calculated)
8.555
GRAVY (calculated)
-0.719
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHLLQQQDV FGNYNKAREA MGVTCLSNPT QLDQNEKKPS PETGAARPQP PELAVRCPRC DSTNTKFCYY NNYSLSQPRY FCKSCRRYWT KGGTLRNIPV
101: GGGCRKNKRS ATRSLRTTPE PASHDGKAFS AASFGGYSNN DHIDLSLAFA LLNKQPPGSS SQLGFGSSHQ SDMESVFGTG QQKGNAGYAF ENGCSGLDMA
201: MSDPNKVLWG FPWQVNGERF GMMNMGGGGH VDQLDSGREI WTNMNYINSG ALM
101: GGGCRKNKRS ATRSLRTTPE PASHDGKAFS AASFGGYSNN DHIDLSLAFA LLNKQPPGSS SQLGFGSSHQ SDMESVFGTG QQKGNAGYAF ENGCSGLDMA
201: MSDPNKVLWG FPWQVNGERF GMMNMGGGGH VDQLDSGREI WTNMNYINSG ALM
001: MDHLLQHQDV FGNYNKAREA MGLSYSSNPT PLDNDQKKPS PATAVTRPQP PELALRCPRC DSTNTKFCYY NNYSLTQPRY FCKSCRRYWT KGGTLRNIPV
101: GGGCRKNKRS TSSAARSLRT TPEPASHDGK VFSAAGFNGY SNNEHIDLSL AFALLNKQHP GSSSQLGFHS ELGSSHQSDM EGMFGTSQQK ENATYAFGNG
201: SSGLGDPSRV LWGFPWQMNG ESFGMMNIGG GGGHVDQIDS GREMWTNMNY INSGALM
101: GGGCRKNKRS TSSAARSLRT TPEPASHDGK VFSAAGFNGY SNNEHIDLSL AFALLNKQHP GSSSQLGFHS ELGSSHQSDM EGMFGTSQQK ENATYAFGNG
201: SSGLGDPSRV LWGFPWQMNG ESFGMMNIGG GGGHVDQIDS GREMWTNMNY INSGALM
Arabidopsis Description
DOF5.3Dof zinc finger protein DOF5.3 [Source:UniProtKB/Swiss-Prot;Acc:Q84TE9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.